Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2251 | 3' | -55.4 | NC_001405.1 | + | 13016 | 1.13 | 0.000315 |
Target: 5'- cCUUCACGGACAGUGGCAGCGUGUCCCg -3' miRNA: 3'- -GAAGUGCCUGUCACCGUCGCACAGGG- -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 13118 | 0.74 | 0.209849 |
Target: 5'- -cUCGCGGuACAGUGuCAGCaagugaccuagguauGUGUCCCg -3' miRNA: 3'- gaAGUGCC-UGUCACcGUCG---------------CACAGGG- -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 14195 | 0.72 | 0.264178 |
Target: 5'- --gCGCGGcgcCAGUGGCGGCGgcgcuggGUUCCc -3' miRNA: 3'- gaaGUGCCu--GUCACCGUCGCa------CAGGG- -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 8525 | 0.7 | 0.367063 |
Target: 5'- ---gGCGGGCGGUgGGCcgcgGGgGUGUCCUu -3' miRNA: 3'- gaagUGCCUGUCA-CCG----UCgCACAGGG- -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 7688 | 0.68 | 0.449843 |
Target: 5'- -gUCACGGGCcauuagcauuugcaGGUGGUcGCGaaagGUCCUa -3' miRNA: 3'- gaAGUGCCUG--------------UCACCGuCGCa---CAGGG- -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 27982 | 0.68 | 0.463078 |
Target: 5'- --cCGCGGGCAaagcacuuGUGGCGGCGgcaugGUCg- -3' miRNA: 3'- gaaGUGCCUGU--------CACCGUCGCa----CAGgg -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 9111 | 0.68 | 0.494371 |
Target: 5'- -----aGGGUGGUGGCGGUGUGUUCUg -3' miRNA: 3'- gaagugCCUGUCACCGUCGCACAGGG- -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 17577 | 0.67 | 0.525507 |
Target: 5'- --gCACGGGCuggcgacggcgacGGcGGCGGCGgGUUCCa -3' miRNA: 3'- gaaGUGCCUG-------------UCaCCGUCGCaCAGGG- -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 3852 | 0.67 | 0.537512 |
Target: 5'- --cCGCGGGCGGUGGCugcAGCGg--CUg -3' miRNA: 3'- gaaGUGCCUGUCACCG---UCGCacaGGg -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 25374 | 0.66 | 0.593101 |
Target: 5'- --cCAUGGGCGuGUGGCAGCaaugCCUg -3' miRNA: 3'- gaaGUGCCUGU-CACCGUCGcacaGGG- -5' |
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2251 | 3' | -55.4 | NC_001405.1 | + | 31760 | 0.66 | 0.593101 |
Target: 5'- ---aACGGGCGGUGGCAuGCGUa---- -3' miRNA: 3'- gaagUGCCUGUCACCGU-CGCAcaggg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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