miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22510 3' -48.4 NC_005074.1 + 3293 0.71 0.190082
Target:  5'- aGGGGCgGAUGACCggugcuugCGAUcUAGCg -3'
miRNA:   3'- -CCCCGgUUGUUGGaaa-----GCUAuAUCGg -5'
22510 3' -48.4 NC_005074.1 + 3207 0.67 0.3191
Target:  5'- uGGGGUCGaggcaugcuGCAACCg--CGAUcc-GCCa -3'
miRNA:   3'- -CCCCGGU---------UGUUGGaaaGCUAuauCGG- -5'
22510 3' -48.4 NC_005074.1 + 2479 1.17 0.000051
Target:  5'- uGGGGCCAACAACCUUUCGAUAUAGCCg -3'
miRNA:   3'- -CCCCGGUUGUUGGAAAGCUAUAUCGG- -5'
22510 3' -48.4 NC_005074.1 + 2434 0.66 0.393361
Target:  5'- gGGGGgCAGCGAgCggUCGcgGcuGCCg -3'
miRNA:   3'- -CCCCgGUUGUUgGaaAGCuaUauCGG- -5'
22510 3' -48.4 NC_005074.1 + 2061 0.69 0.272818
Target:  5'- cGGGGCC-ACAACC--UCGuagcAGUCa -3'
miRNA:   3'- -CCCCGGuUGUUGGaaAGCuauaUCGG- -5'
22510 3' -48.4 NC_005074.1 + 1987 0.67 0.339198
Target:  5'- uGGGCCGACAGCUacUCcaguaGGCCu -3'
miRNA:   3'- cCCCGGUUGUUGGaaAGcuauaUCGG- -5'
22510 3' -48.4 NC_005074.1 + 1394 0.69 0.27195
Target:  5'- -uGGCCGACGACUgccgucaccucaaUUUCGcgAcGGCCa -3'
miRNA:   3'- ccCCGGUUGUUGG-------------AAAGCuaUaUCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.