miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22524 5' -45.1 NC_005083.1 + 84432 0.66 0.999999
Target:  5'- -aGAAaAUGCCUGACcuUUGAACGu--- -3'
miRNA:   3'- ugCUUgUACGGACUG--AACUUGUuaaa -5'
22524 5' -45.1 NC_005083.1 + 28297 0.66 0.999999
Target:  5'- uUGAAUAUGCUU--CUUGAGCAGUa- -3'
miRNA:   3'- uGCUUGUACGGAcuGAACUUGUUAaa -5'
22524 5' -45.1 NC_005083.1 + 16558 0.66 0.999999
Target:  5'- cAUGAACAacugGCUUGGCUUGuGAUAGUa- -3'
miRNA:   3'- -UGCUUGUa---CGGACUGAAC-UUGUUAaa -5'
22524 5' -45.1 NC_005083.1 + 134439 0.66 0.999999
Target:  5'- uUGAACAUGCUUGAUUUcAAUAAa-- -3'
miRNA:   3'- uGCUUGUACGGACUGAAcUUGUUaaa -5'
22524 5' -45.1 NC_005083.1 + 168975 0.66 0.999999
Target:  5'- --uGACGUGUCUGGCUcuaUGAGCAc--- -3'
miRNA:   3'- ugcUUGUACGGACUGA---ACUUGUuaaa -5'
22524 5' -45.1 NC_005083.1 + 206004 0.67 0.999996
Target:  5'- uCGAACc-GCCUGuaccaccuGCUUGAACAAUg- -3'
miRNA:   3'- uGCUUGuaCGGAC--------UGAACUUGUUAaa -5'
22524 5' -45.1 NC_005083.1 + 81329 0.67 0.999995
Target:  5'- cAUGAGCGUGCUucauguuguUGACUUGccgGACGGUa- -3'
miRNA:   3'- -UGCUUGUACGG---------ACUGAAC---UUGUUAaa -5'
22524 5' -45.1 NC_005083.1 + 84850 0.69 0.999948
Target:  5'- cACGA--GUGCCUGGCUUGuuGCAc--- -3'
miRNA:   3'- -UGCUugUACGGACUGAACu-UGUuaaa -5'
22524 5' -45.1 NC_005083.1 + 126851 0.7 0.999798
Target:  5'- gACGGugAgaaacUGCCUGACUuUGAGCAc--- -3'
miRNA:   3'- -UGCUugU-----ACGGACUGA-ACUUGUuaaa -5'
22524 5' -45.1 NC_005083.1 + 147052 0.7 0.999741
Target:  5'- cGCGcuCAUGCUUGACUUGAGu----- -3'
miRNA:   3'- -UGCuuGUACGGACUGAACUUguuaaa -5'
22524 5' -45.1 NC_005083.1 + 39508 1.07 0.059418
Target:  5'- cACGAACAUGCCUGACUUGAACAAUUUa -3'
miRNA:   3'- -UGCUUGUACGGACUGAACUUGUUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.