miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22529 5' -43.4 NC_005083.1 + 229235 0.68 1
Target:  5'- aAGGGAAUUGuUGCAgguaaagucuCGAUUGACGAUg -3'
miRNA:   3'- gUCUCUUAAU-AUGU----------GCUGACUGUUGu -5'
22529 5' -43.4 NC_005083.1 + 103814 0.67 1
Target:  5'- aAGAGAGUUucACGCG-CUGAgaAACAa -3'
miRNA:   3'- gUCUCUUAAuaUGUGCuGACUg-UUGU- -5'
22529 5' -43.4 NC_005083.1 + 206676 0.66 1
Target:  5'- -uGGGAAUUGUAuCAC-ACUGAuaCAACAa -3'
miRNA:   3'- guCUCUUAAUAU-GUGcUGACU--GUUGU- -5'
22529 5' -43.4 NC_005083.1 + 56320 0.66 1
Target:  5'- --------cGUACGCGACgUGACGACGa -3'
miRNA:   3'- gucucuuaaUAUGUGCUG-ACUGUUGU- -5'
22529 5' -43.4 NC_005083.1 + 178449 0.66 1
Target:  5'- gUAGAGAAUaAUugAUagccuCUGGCAACAa -3'
miRNA:   3'- -GUCUCUUAaUAugUGcu---GACUGUUGU- -5'
22529 5' -43.4 NC_005083.1 + 166677 0.67 1
Target:  5'- aAGcAGAAUcugaugcucguuucgUAaACGCGACUGGCGAUAc -3'
miRNA:   3'- gUC-UCUUA---------------AUaUGUGCUGACUGUUGU- -5'
22529 5' -43.4 NC_005083.1 + 52092 0.69 0.999999
Target:  5'- -uGAGGAUUGgaACACGACUG-CGAUu -3'
miRNA:   3'- guCUCUUAAUa-UGUGCUGACuGUUGu -5'
22529 5' -43.4 NC_005083.1 + 81590 0.7 0.999991
Target:  5'- aGGAGAGca--AUAUGAUUGACAACAu -3'
miRNA:   3'- gUCUCUUaauaUGUGCUGACUGUUGU- -5'
22529 5' -43.4 NC_005083.1 + 203231 0.71 0.999976
Target:  5'- gAGAGAAUUGaauuucaaaACACGACUG-CGACu -3'
miRNA:   3'- gUCUCUUAAUa--------UGUGCUGACuGUUGu -5'
22529 5' -43.4 NC_005083.1 + 110567 0.74 0.999114
Target:  5'- gCAGAGAAagUAUcACGCGAgUGugAGCAa -3'
miRNA:   3'- -GUCUCUUa-AUA-UGUGCUgACugUUGU- -5'
22529 5' -43.4 NC_005083.1 + 189415 0.76 0.996096
Target:  5'- -uGGGAAUUGUcuuucaugcGCugGugUGACAACAa -3'
miRNA:   3'- guCUCUUAAUA---------UGugCugACUGUUGU- -5'
22529 5' -43.4 NC_005083.1 + 81827 1.11 0.063053
Target:  5'- aCAGAGAAUUAUACACGACUGACAACAc -3'
miRNA:   3'- -GUCUCUUAAUAUGUGCUGACUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.