Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2253 | 5' | -60.4 | NC_001405.1 | + | 4765 | 0.69 | 0.182799 |
Target: 5'- aUACC-GCAguCUgGCACCcUCCGCCCGc -3' miRNA: 3'- aAUGGuCGU--GAgCGUGGuGGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 14243 | 0.68 | 0.245214 |
Target: 5'- -cACUGGCGC-CGCGCuCACCaCGCUCu -3' miRNA: 3'- aaUGGUCGUGaGCGUG-GUGG-GCGGGc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 27697 | 0.67 | 0.25169 |
Target: 5'- -gGCCAGCGC-CGCcgaucugaaAUguCCCGUCCGg -3' miRNA: 3'- aaUGGUCGUGaGCG---------UGguGGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 24383 | 0.67 | 0.279007 |
Target: 5'- -cGCCAuGCcUUUGguCCcCCCGCCCGa -3' miRNA: 3'- aaUGGU-CGuGAGCguGGuGGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 26900 | 0.66 | 0.324323 |
Target: 5'- -gACgCAGCGCUCcuccuccuGCugCugCCGCCg- -3' miRNA: 3'- aaUG-GUCGUGAG--------CGugGugGGCGGgc -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 6629 | 0.66 | 0.324323 |
Target: 5'- cUACUucgACgCGCGCCugCUGCCCGg -3' miRNA: 3'- aAUGGucgUGaGCGUGGugGGCGGGC- -5' |
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2253 | 5' | -60.4 | NC_001405.1 | + | 12247 | 0.74 | 0.083081 |
Target: 5'- gUUGCCAGCGCgCGCggguGCCACCgccaGCCCa -3' miRNA: 3'- -AAUGGUCGUGaGCG----UGGUGGg---CGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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