miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2253 5' -60.4 NC_001405.1 + 3131 0.66 0.301008
Target:  5'- -aGCCAGCcacuCUCGCAagGCCUGgCCa -3'
miRNA:   3'- aaUGGUCGu---GAGCGUggUGGGCgGGc -5'
2253 5' -60.4 NC_001405.1 + 3690 0.68 0.220685
Target:  5'- --uCCAGCAUugauggUCGCcCCGuCCUGCCCGc -3'
miRNA:   3'- aauGGUCGUG------AGCGuGGU-GGGCGGGC- -5'
2253 5' -60.4 NC_001405.1 + 4765 0.69 0.182799
Target:  5'- aUACC-GCAguCUgGCACCcUCCGCCCGc -3'
miRNA:   3'- aAUGGuCGU--GAgCGUGGuGGGCGGGC- -5'
2253 5' -60.4 NC_001405.1 + 6629 0.66 0.324323
Target:  5'- cUACUucgACgCGCGCCugCUGCCCGg -3'
miRNA:   3'- aAUGGucgUGaGCGUGGugGGCGGGC- -5'
2253 5' -60.4 NC_001405.1 + 6695 0.72 0.12049
Target:  5'- aUACgAGCg--CGCGCUugCCGCCCGc -3'
miRNA:   3'- aAUGgUCGugaGCGUGGugGGCGGGC- -5'
2253 5' -60.4 NC_001405.1 + 8726 0.71 0.146646
Target:  5'- -cGCCAGCAacCUCcgcgcgcaGCACCAgcuCCUGCCCGc -3'
miRNA:   3'- aaUGGUCGU--GAG--------CGUGGU---GGGCGGGC- -5'
2253 5' -60.4 NC_001405.1 + 9789 0.7 0.155022
Target:  5'- -gACCGcCACcCGCuGCCGCCCGCCaCGg -3'
miRNA:   3'- aaUGGUcGUGaGCG-UGGUGGGCGG-GC- -5'
2253 5' -60.4 NC_001405.1 + 10830 0.7 0.15937
Target:  5'- -aGCUAGCGCa-GCAgCCGCCgCGCCUGg -3'
miRNA:   3'- aaUGGUCGUGagCGU-GGUGG-GCGGGC- -5'
2253 5' -60.4 NC_001405.1 + 12085 0.73 0.104238
Target:  5'- -cAUCAGCucgcggucgcugaGCUCGCGCCGCCgGCUCa -3'
miRNA:   3'- aaUGGUCG-------------UGAGCGUGGUGGgCGGGc -5'
2253 5' -60.4 NC_001405.1 + 12247 0.74 0.083081
Target:  5'- gUUGCCAGCGCgCGCggguGCCACCgccaGCCCa -3'
miRNA:   3'- -AAUGGUCGUGaGCG----UGGUGGg---CGGGc -5'
2253 5' -60.4 NC_001405.1 + 12383 0.71 0.138685
Target:  5'- -gGCUGGCuCUgcaGCGCCGCCCGCaCCGc -3'
miRNA:   3'- aaUGGUCGuGAg--CGUGGUGGGCG-GGC- -5'
2253 5' -60.4 NC_001405.1 + 13453 0.69 0.187836
Target:  5'- -aACCcGCACUgGCuACCGCCC-CCUGg -3'
miRNA:   3'- aaUGGuCGUGAgCG-UGGUGGGcGGGC- -5'
2253 5' -60.4 NC_001405.1 + 13714 1.05 0.000298
Target:  5'- uUUACCAGCACUCGCACCACCCGCCCGc -3'
miRNA:   3'- -AAUGGUCGUGAGCGUGGUGGGCGGGC- -5'
2253 5' -60.4 NC_001405.1 + 13897 0.67 0.258306
Target:  5'- -gGCCcGCGCcCGC-CCACCCGUCg- -3'
miRNA:   3'- aaUGGuCGUGaGCGuGGUGGGCGGgc -5'
2253 5' -60.4 NC_001405.1 + 14243 0.68 0.245214
Target:  5'- -cACUGGCGC-CGCGCuCACCaCGCUCu -3'
miRNA:   3'- aaUGGUCGUGaGCGUG-GUGG-GCGGGc -5'
2253 5' -60.4 NC_001405.1 + 15103 0.7 0.155022
Target:  5'- gUUGCCGcCGCcUGCGCCAucCCCGCCCu -3'
miRNA:   3'- -AAUGGUcGUGaGCGUGGU--GGGCGGGc -5'
2253 5' -60.4 NC_001405.1 + 15770 0.68 0.243298
Target:  5'- -cGCCAGaCGC-CGCACCugCCccuacguuuacaagGCCCu -3'
miRNA:   3'- aaUGGUC-GUGaGCGUGGugGG--------------CGGGc -5'
2253 5' -60.4 NC_001405.1 + 16412 0.71 0.131123
Target:  5'- -gGCCuGCGCgugccCGUGCgCACCCGCCCc -3'
miRNA:   3'- aaUGGuCGUGa----GCGUG-GUGGGCGGGc -5'
2253 5' -60.4 NC_001405.1 + 18565 0.67 0.271963
Target:  5'- cUGCCAGgGC-CGUccGCCguuguuguaACCCGCCCu -3'
miRNA:   3'- aAUGGUCgUGaGCG--UGG---------UGGGCGGGc -5'
2253 5' -60.4 NC_001405.1 + 22263 0.69 0.191435
Target:  5'- -aACCAGgaacaGCUCuacagcuuccuggaGCGCCACUCGCCCu -3'
miRNA:   3'- aaUGGUCg----UGAG--------------CGUGGUGGGCGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.