miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22530 3' -43.4 NC_005083.1 + 8408 0.68 1
Target:  5'- gUCGUGAAUGguGUCUGaccauuugaaguCUGCAu- -3'
miRNA:   3'- -AGUACUUACguUAGACauu---------GACGUuu -5'
22530 3' -43.4 NC_005083.1 + 62618 0.67 1
Target:  5'- uUCAUGuAAUGCAGUgcuauacaaCUGUGguuuCUGCAAu -3'
miRNA:   3'- -AGUAC-UUACGUUA---------GACAUu---GACGUUu -5'
22530 3' -43.4 NC_005083.1 + 221345 0.66 1
Target:  5'- cCAUGAcgGCAuUUUGUagucaGACUGCu-- -3'
miRNA:   3'- aGUACUuaCGUuAGACA-----UUGACGuuu -5'
22530 3' -43.4 NC_005083.1 + 194956 0.69 0.999998
Target:  5'- uUCAcGAGUcGCAAUCUGUAGCagGuCAAGu -3'
miRNA:   3'- -AGUaCUUA-CGUUAGACAUUGa-C-GUUU- -5'
22530 3' -43.4 NC_005083.1 + 169062 0.69 0.999998
Target:  5'- gUCAUGGuaAUGC-GUCUGUAGCgaacgaGCAAu -3'
miRNA:   3'- -AGUACU--UACGuUAGACAUUGa-----CGUUu -5'
22530 3' -43.4 NC_005083.1 + 238460 0.69 0.999998
Target:  5'- aUCGUGAugaGgGAUCUGUAACUGa--- -3'
miRNA:   3'- -AGUACUua-CgUUAGACAUUGACguuu -5'
22530 3' -43.4 NC_005083.1 + 56697 0.7 0.999983
Target:  5'- aUCAUGGG-GCAGggUUGUAACUGCu-- -3'
miRNA:   3'- -AGUACUUaCGUUa-GACAUUGACGuuu -5'
22530 3' -43.4 NC_005083.1 + 36333 0.72 0.9997
Target:  5'- -gGUcGAUGuCAGUCUGUGACUGUAAc -3'
miRNA:   3'- agUAcUUAC-GUUAGACAUUGACGUUu -5'
22530 3' -43.4 NC_005083.1 + 122747 0.75 0.996951
Target:  5'- aUCGUGcucgauuGAUGUAAUCUG-AACUGCAAu -3'
miRNA:   3'- -AGUAC-------UUACGUUAGACaUUGACGUUu -5'
22530 3' -43.4 NC_005083.1 + 166450 0.78 0.98214
Target:  5'- aUCGUGAGUaugagagucgucaGCAA-CUGUAACUGCGAGu -3'
miRNA:   3'- -AGUACUUA-------------CGUUaGACAUUGACGUUU- -5'
22530 3' -43.4 NC_005083.1 + 103514 1.09 0.063114
Target:  5'- aUCAUGAAUGCAAUCUGUAACUGCAAAg -3'
miRNA:   3'- -AGUACUUACGUUAGACAUUGACGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.