miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22530 5' -45.9 NC_005083.1 + 39185 0.66 1
Target:  5'- --aAUACAGUuCAGCGGCua-CGUCg -3'
miRNA:   3'- cugUAUGUCAuGUCGCUGuaaGUAGg -5'
22530 5' -45.9 NC_005083.1 + 194229 0.66 1
Target:  5'- cGCcgGUAGUGCAGCaACGUUUAgUCCg -3'
miRNA:   3'- cUGuaUGUCAUGUCGcUGUAAGU-AGG- -5'
22530 5' -45.9 NC_005083.1 + 103567 0.66 1
Target:  5'- gGACAUugaauuuCAGUAUaaGGCGGCAUU--UCCc -3'
miRNA:   3'- -CUGUAu------GUCAUG--UCGCUGUAAguAGG- -5'
22530 5' -45.9 NC_005083.1 + 209043 0.66 0.999999
Target:  5'- aACAUGCAGuUACAGUGggcACAUUgaAUCUa -3'
miRNA:   3'- cUGUAUGUC-AUGUCGC---UGUAAg-UAGG- -5'
22530 5' -45.9 NC_005083.1 + 102738 0.66 0.999999
Target:  5'- cGCGU-CuGUugAGUGGCAUUCAgcgaCCa -3'
miRNA:   3'- cUGUAuGuCAugUCGCUGUAAGUa---GG- -5'
22530 5' -45.9 NC_005083.1 + 161991 0.67 0.999998
Target:  5'- cGCAUAguGUaACAGCGccgACAUUCGUg- -3'
miRNA:   3'- cUGUAUguCA-UGUCGC---UGUAAGUAgg -5'
22530 5' -45.9 NC_005083.1 + 115762 0.67 0.999996
Target:  5'- cGACGUuauUGGUACuGCGGCAcucgcguacUUCAUCg -3'
miRNA:   3'- -CUGUAu--GUCAUGuCGCUGU---------AAGUAGg -5'
22530 5' -45.9 NC_005083.1 + 230231 0.68 0.999986
Target:  5'- aGGC-UAC--UAUGGCGACAcgUUCAUCCa -3'
miRNA:   3'- -CUGuAUGucAUGUCGCUGU--AAGUAGG- -5'
22530 5' -45.9 NC_005083.1 + 156360 0.68 0.999981
Target:  5'- aGACGUucuaucACGGUACAuCGACuacGUUCAUCg -3'
miRNA:   3'- -CUGUA------UGUCAUGUcGCUG---UAAGUAGg -5'
22530 5' -45.9 NC_005083.1 + 241448 0.68 0.999974
Target:  5'- uGGguUACAgcgcGUACAGUGACGUUCA-CUg -3'
miRNA:   3'- -CUguAUGU----CAUGUCGCUGUAAGUaGG- -5'
22530 5' -45.9 NC_005083.1 + 157475 0.68 0.999964
Target:  5'- cGACGUACGuaACAGCGAagauGUUCAauguuggucUCCa -3'
miRNA:   3'- -CUGUAUGUcaUGUCGCUg---UAAGU---------AGG- -5'
22530 5' -45.9 NC_005083.1 + 213352 0.69 0.999952
Target:  5'- -uCGUGCcuAGcgGCAGUGACGUUCAgCCu -3'
miRNA:   3'- cuGUAUG--UCa-UGUCGCUGUAAGUaGG- -5'
22530 5' -45.9 NC_005083.1 + 230058 0.69 0.999917
Target:  5'- aGACA-AUcGUACAGCGugucGCGUUCGUCg -3'
miRNA:   3'- -CUGUaUGuCAUGUCGC----UGUAAGUAGg -5'
22530 5' -45.9 NC_005083.1 + 7225 0.71 0.999278
Target:  5'- uGAUAUugAUGGUACAGCGAauUAUUCAgcgCCu -3'
miRNA:   3'- -CUGUA--UGUCAUGUCGCU--GUAAGUa--GG- -5'
22530 5' -45.9 NC_005083.1 + 242595 0.71 0.999278
Target:  5'- aGACAUuaaACAGUcguACAGCGACugaaucUCGUCg -3'
miRNA:   3'- -CUGUA---UGUCA---UGUCGCUGua----AGUAGg -5'
22530 5' -45.9 NC_005083.1 + 103480 1.15 0.021063
Target:  5'- uGACAUACAGUACAGCGACAUUCAUCCa -3'
miRNA:   3'- -CUGUAUGUCAUGUCGCUGUAAGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.