miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22533 3' -43.9 NC_005083.1 + 153923 0.66 1
Target:  5'- --uUGGGUaau-UACAGGUggUGAGCc -3'
miRNA:   3'- uauACCCAaucuGUGUUCGuuAUUCG- -5'
22533 3' -43.9 NC_005083.1 + 224866 0.66 1
Target:  5'- --uUGGc-UGGACACcagcaauaucgaAAGCGAUAAGCu -3'
miRNA:   3'- uauACCcaAUCUGUG------------UUCGUUAUUCG- -5'
22533 3' -43.9 NC_005083.1 + 182983 0.66 1
Target:  5'- --uUGGuaucaaaUUAGACG-AAGCAAUAAGCa -3'
miRNA:   3'- uauACCc------AAUCUGUgUUCGUUAUUCG- -5'
22533 3' -43.9 NC_005083.1 + 242788 0.67 1
Target:  5'- cUAUGGGUU--GCuaaGAGCAcUGAGCu -3'
miRNA:   3'- uAUACCCAAucUGug-UUCGUuAUUCG- -5'
22533 3' -43.9 NC_005083.1 + 212902 0.66 1
Target:  5'- -gGUGGGaUGGugACG-GCGAUuGGUa -3'
miRNA:   3'- uaUACCCaAUCugUGUuCGUUAuUCG- -5'
22533 3' -43.9 NC_005083.1 + 196568 0.66 1
Target:  5'- gAUAUGGGUUAuGCucCAAGCucuuuGUcGGCa -3'
miRNA:   3'- -UAUACCCAAUcUGu-GUUCGu----UAuUCG- -5'
22533 3' -43.9 NC_005083.1 + 4531 0.67 1
Target:  5'- ------cUUAGACAUAAGCuGUAGGCg -3'
miRNA:   3'- uauacccAAUCUGUGUUCGuUAUUCG- -5'
22533 3' -43.9 NC_005083.1 + 107684 0.68 0.999999
Target:  5'- -cAUGGGUacuGACGCugaAGGCGAagcauuUGAGCa -3'
miRNA:   3'- uaUACCCAau-CUGUG---UUCGUU------AUUCG- -5'
22533 3' -43.9 NC_005083.1 + 216700 0.69 0.999997
Target:  5'- ---cGGGUUcAGACGCAGuacGUggUAAGUc -3'
miRNA:   3'- uauaCCCAA-UCUGUGUU---CGuuAUUCG- -5'
22533 3' -43.9 NC_005083.1 + 191686 0.7 0.999982
Target:  5'- cGUAaGGGUgcuGAUACGGGCGAUGguaaauggacuucuGGCa -3'
miRNA:   3'- -UAUaCCCAau-CUGUGUUCGUUAU--------------UCG- -5'
22533 3' -43.9 NC_005083.1 + 150781 0.7 0.999973
Target:  5'- uUGUGcguuuGGUUGGcACACGugggaauauacgaaaGGCAGUAAGCg -3'
miRNA:   3'- uAUAC-----CCAAUC-UGUGU---------------UCGUUAUUCG- -5'
22533 3' -43.9 NC_005083.1 + 184181 1.11 0.047513
Target:  5'- uAUAUGGGUUAGACACAAGCAAUAAGCc -3'
miRNA:   3'- -UAUACCCAAUCUGUGUUCGUUAUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.