miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22533 5' -39.9 NC_005083.1 + 155870 0.69 1
Target:  5'- gGGGCUUUUUU-GUGUCUG--UCa--- -3'
miRNA:   3'- -CCCGAAAAAAaCAUAGACuuAGaucu -5'
22533 5' -39.9 NC_005083.1 + 107022 0.66 1
Target:  5'- gGGGCUUUUUUag-GUCUGAAg----- -3'
miRNA:   3'- -CCCGAAAAAAacaUAGACUUagaucu -5'
22533 5' -39.9 NC_005083.1 + 238422 0.67 1
Target:  5'- uGGGCUUUgccuaucGUGUCUGAAgUCa--- -3'
miRNA:   3'- -CCCGAAAaaaa---CAUAGACUU-AGaucu -5'
22533 5' -39.9 NC_005083.1 + 8300 0.8 0.9987
Target:  5'- cGGCU---UUUGaAUCUGAAUCUGGAu -3'
miRNA:   3'- cCCGAaaaAAACaUAGACUUAGAUCU- -5'
22533 5' -39.9 NC_005083.1 + 184147 1.16 0.086932
Target:  5'- gGGGCUUUUUUUGUAUCUGAAUCUAGAg -3'
miRNA:   3'- -CCCGAAAAAAACAUAGACUUAGAUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.