miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22537 5' -49.4 NC_005083.1 + 103281 0.66 0.999774
Target:  5'- aUGACGGUUggGAaauGCCGCCuuaUACu -3'
miRNA:   3'- -ACUGCUAGuuCUac-UGGCGGuucAUG- -5'
22537 5' -49.4 NC_005083.1 + 75978 0.68 0.998504
Target:  5'- aGAUGAUCAA---GACCGCgCAcucugGGUACa -3'
miRNA:   3'- aCUGCUAGUUcuaCUGGCG-GU-----UCAUG- -5'
22537 5' -49.4 NC_005083.1 + 115146 0.68 0.998504
Target:  5'- aUGAaguUGAUCA--AUGAcCCGCCGAGUGa -3'
miRNA:   3'- -ACU---GCUAGUucUACU-GGCGGUUCAUg -5'
22537 5' -49.4 NC_005083.1 + 133285 0.69 0.995176
Target:  5'- aUGACGAaaUCAucAUGAUCauucuuuuGCCAAGUACa -3'
miRNA:   3'- -ACUGCU--AGUucUACUGG--------CGGUUCAUG- -5'
22537 5' -49.4 NC_005083.1 + 222265 0.7 0.992548
Target:  5'- uUGGCGGUCAucuUGAUCGUCAAGa-- -3'
miRNA:   3'- -ACUGCUAGUucuACUGGCGGUUCaug -5'
22537 5' -49.4 NC_005083.1 + 34959 0.7 0.991454
Target:  5'- gUGACGAUCAGGcaGACCagcaGUCAcGUACa -3'
miRNA:   3'- -ACUGCUAGUUCuaCUGG----CGGUuCAUG- -5'
22537 5' -49.4 NC_005083.1 + 221778 0.71 0.979861
Target:  5'- cGAUGucucCAAGcgacUGACCGCCAGGUAg -3'
miRNA:   3'- aCUGCua--GUUCu---ACUGGCGGUUCAUg -5'
22537 5' -49.4 NC_005083.1 + 222531 1.11 0.015399
Target:  5'- uUGACGAUCAAGAUGACCGCCAAGUACu -3'
miRNA:   3'- -ACUGCUAGUUCUACUGGCGGUUCAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.