miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22538 5' -55.9 NC_005083.1 + 3912 0.66 0.951803
Target:  5'- uGAACACACCuGGCGGUAacuuugCUGCuGCUUg -3'
miRNA:   3'- gUUUGUGUGG-UCGUCGUg-----GACG-CGGA- -5'
22538 5' -55.9 NC_005083.1 + 4289 0.66 0.951803
Target:  5'- aCAAGCAaggaaaAUCA-UAGUACCUGCGCUa -3'
miRNA:   3'- -GUUUGUg-----UGGUcGUCGUGGACGCGGa -5'
22538 5' -55.9 NC_005083.1 + 225560 0.66 0.947676
Target:  5'- gUAAGCuuCACCAGCccaacgAGCGCCuuucacgucuacUGCGUCUg -3'
miRNA:   3'- -GUUUGu-GUGGUCG------UCGUGG------------ACGCGGA- -5'
22538 5' -55.9 NC_005083.1 + 215241 0.66 0.947676
Target:  5'- cCAGACACuaauUCAGUAGCACUaauacCGCCa -3'
miRNA:   3'- -GUUUGUGu---GGUCGUCGUGGac---GCGGa -5'
22538 5' -55.9 NC_005083.1 + 195419 0.66 0.940599
Target:  5'- uCAGAUACAUCaAGCAGUACUagacgaucuggguaGCGCCa -3'
miRNA:   3'- -GUUUGUGUGG-UCGUCGUGGa-------------CGCGGa -5'
22538 5' -55.9 NC_005083.1 + 41010 0.66 0.938737
Target:  5'- uCAGGCGCugguuauCCAGCcaguGCGCUgucaaacuuUGCGCCUc -3'
miRNA:   3'- -GUUUGUGu------GGUCGu---CGUGG---------ACGCGGA- -5'
22538 5' -55.9 NC_005083.1 + 56422 0.66 0.938737
Target:  5'- gAAACACGCUcagaaccaAGCuacucuGCACCUGaGCCg -3'
miRNA:   3'- gUUUGUGUGG--------UCGu-----CGUGGACgCGGa -5'
22538 5' -55.9 NC_005083.1 + 168667 0.67 0.928874
Target:  5'- aCAAGuCACACCuGaacgaucuGCACCUGCGUUg -3'
miRNA:   3'- -GUUU-GUGUGGuCgu------CGUGGACGCGGa -5'
22538 5' -55.9 NC_005083.1 + 204202 0.67 0.917515
Target:  5'- ----aGCACCGGCAGCAuagagUCUGCuaccgucGCCUa -3'
miRNA:   3'- guuugUGUGGUCGUCGU-----GGACG-------CGGA- -5'
22538 5' -55.9 NC_005083.1 + 38928 0.67 0.906357
Target:  5'- aCAAACACgACCAGCAcGCAU-UGCGUg- -3'
miRNA:   3'- -GUUUGUG-UGGUCGU-CGUGgACGCGga -5'
22538 5' -55.9 NC_005083.1 + 41283 0.68 0.880188
Target:  5'- -cAGCGCACUGGCuGGauaACCaGCGCCUg -3'
miRNA:   3'- guUUGUGUGGUCG-UCg--UGGaCGCGGA- -5'
22538 5' -55.9 NC_005083.1 + 219220 0.69 0.842691
Target:  5'- cCGAACAUccaAUCGuCAGCACCUGCGUUa -3'
miRNA:   3'- -GUUUGUG---UGGUcGUCGUGGACGCGGa -5'
22538 5' -55.9 NC_005083.1 + 44212 0.69 0.826343
Target:  5'- uGAACACGCCGGaAGCACCgGaUGCUg -3'
miRNA:   3'- gUUUGUGUGGUCgUCGUGGaC-GCGGa -5'
22538 5' -55.9 NC_005083.1 + 172042 0.7 0.809307
Target:  5'- -cAGCAgCACCAGCagcuacuuuAGCACCUGUuuuuGCCg -3'
miRNA:   3'- guUUGU-GUGGUCG---------UCGUGGACG----CGGa -5'
22538 5' -55.9 NC_005083.1 + 162190 0.7 0.782599
Target:  5'- uCAAGCACACCAGCAGauguaACUUuuGCUa -3'
miRNA:   3'- -GUUUGUGUGGUCGUCg----UGGAcgCGGa -5'
22538 5' -55.9 NC_005083.1 + 118998 0.7 0.773422
Target:  5'- ---cCAUGCCAGCcGCuacAUCUGCGCCUa -3'
miRNA:   3'- guuuGUGUGGUCGuCG---UGGACGCGGA- -5'
22538 5' -55.9 NC_005083.1 + 154692 0.71 0.745187
Target:  5'- ---uUACAUUAGCGGCACC-GCGCUa -3'
miRNA:   3'- guuuGUGUGGUCGUCGUGGaCGCGGa -5'
22538 5' -55.9 NC_005083.1 + 190115 0.71 0.742312
Target:  5'- uCAAGCugACCGGCAGCAUUUGauugaaugaaugaaCGCUUg -3'
miRNA:   3'- -GUUUGugUGGUCGUCGUGGAC--------------GCGGA- -5'
22538 5' -55.9 NC_005083.1 + 194535 0.74 0.545845
Target:  5'- uUAAACGCACCAGCAGCAa--GUGUCa -3'
miRNA:   3'- -GUUUGUGUGGUCGUCGUggaCGCGGa -5'
22538 5' -55.9 NC_005083.1 + 225508 1.06 0.005763
Target:  5'- uCAAACACACCAGCAGCACCUGCGCCUu -3'
miRNA:   3'- -GUUUGUGUGGUCGUCGUGGACGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.