miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22541 5' -47.6 NC_005083.1 + 161559 0.68 0.999626
Target:  5'- aUACGGcucAGAUCGUUUCgucgcUGAAUAGCuCAAc -3'
miRNA:   3'- -GUGCC---UUUAGCAAAG-----ACUUGUCG-GUU- -5'
22541 5' -47.6 NC_005083.1 + 7263 0.68 0.999531
Target:  5'- uGCGuuAcgUGUagUCUGAGCAGCCGAc -3'
miRNA:   3'- gUGCcuUuaGCAa-AGACUUGUCGGUU- -5'
22541 5' -47.6 NC_005083.1 + 141056 0.7 0.996773
Target:  5'- gUACGu--AUCGUUUUUGAuuGCAGCCAGc -3'
miRNA:   3'- -GUGCcuuUAGCAAAGACU--UGUCGGUU- -5'
22541 5' -47.6 NC_005083.1 + 36578 0.76 0.915765
Target:  5'- aGCGGAuauAGUCGUUUUUGAACAGUa-- -3'
miRNA:   3'- gUGCCU---UUAGCAAAGACUUGUCGguu -5'
22541 5' -47.6 NC_005083.1 + 36340 1.06 0.039488
Target:  5'- uCACGGAAAUCGUUUCUGAACAGCCAAc -3'
miRNA:   3'- -GUGCCUUUAGCAAAGACUUGUCGGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.