miRNA: 3'- -CCGUac-UGUGUCuuuCUGUugCGCCG- -5'
miRNA: 3'- ccGUACUGUGUCUUUC-UGuUGCGCCG- -5'
miRNA: 3'- -CCGUACUGUGUCUUUCUGUUGCGCCG- -5'
Results 21 - 23 of 23 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 22544 | 3' | -49.6 | NC_005083.1 | + | 167692 | 0.72 | 0.975213 |
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Target: 5'- uGGCGguaACAUAGuuuGGCAugGCGGUa -3' miRNA: 3'- -CCGUac-UGUGUCuuuCUGUugCGCCG- -5' |
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| 22544 | 3' | -49.6 | NC_005083.1 | + | 175164 | 0.76 | 0.856068 |
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Target: 5'- -cCGUGAUACAGGAAGuAUcGCGUGGCa -3' miRNA: 3'- ccGUACUGUGUCUUUC-UGuUGCGCCG- -5' |
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| 22544 | 3' | -49.6 | NC_005083.1 | + | 83858 | 1.17 | 0.007034 |
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Target: 5'- cGGCAUGACACAGAAAGACAACGCGGCg -3' miRNA: 3'- -CCGUACUGUGUCUUUCUGUUGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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