miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22548 5' -46.7 NC_005083.1 + 35825 0.66 0.999973
Target:  5'- -----uAGCCCCgaaa--GGGGCUUUu -3'
miRNA:   3'- uuauuuUCGGGGaauuaaCCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 164451 0.67 0.9998
Target:  5'- uAAUAAAAGCUCCUUc---GGGaGCUUUu -3'
miRNA:   3'- -UUAUUUUCGGGGAAuuaaCCC-CGAAA- -5'
22548 5' -46.7 NC_005083.1 + 238339 0.69 0.999192
Target:  5'- --aGAAAGCCCUUc----GGGGCUUUu -3'
miRNA:   3'- uuaUUUUCGGGGAauuaaCCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 107275 0.69 0.999003
Target:  5'- --aAAAAGCCCCaaUUAA--GGGGCUc- -3'
miRNA:   3'- uuaUUUUCGGGG--AAUUaaCCCCGAaa -5'
22548 5' -46.7 NC_005083.1 + 184159 0.71 0.995666
Target:  5'- ----uAAGCCCCU--AUcGGGGCUUUu -3'
miRNA:   3'- uuauuUUCGGGGAauUAaCCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 29792 0.71 0.994913
Target:  5'- ---uAAAGCUCCgu--UUGGGGCUUUu -3'
miRNA:   3'- uuauUUUCGGGGaauuAACCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 171698 0.72 0.990777
Target:  5'- --aAAAAGCCCCaaaaacGGGGCUUUu -3'
miRNA:   3'- uuaUUUUCGGGGaauuaaCCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 126554 0.72 0.987895
Target:  5'- --aAAAAGCCCCaaUUAA--GGGGCUUUu -3'
miRNA:   3'- uuaUUUUCGGGG--AAUUaaCCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 143134 0.72 0.987895
Target:  5'- --aAAAAGCCCCaaUUAA--GGGGCUUUu -3'
miRNA:   3'- uuaUUUUCGGGG--AAUUaaCCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 78815 0.73 0.975016
Target:  5'- --aAAAAGCCCCaaUUAA--GGGGCUUUg -3'
miRNA:   3'- uuaUUUUCGGGG--AAUUaaCCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 183894 0.74 0.962138
Target:  5'- --aAAAAGCCCC--GAUaGGGGCUUa -3'
miRNA:   3'- uuaUUUUCGGGGaaUUAaCCCCGAAa -5'
22548 5' -46.7 NC_005083.1 + 36089 0.76 0.911794
Target:  5'- --aAAAAGCCCCUUuc--GGGGCUa- -3'
miRNA:   3'- uuaUUUUCGGGGAAuuaaCCCCGAaa -5'
22548 5' -46.7 NC_005083.1 + 171429 0.82 0.694293
Target:  5'- --gAAAAGCCCCguuuUUGGGGCUUUu -3'
miRNA:   3'- uuaUUUUCGGGGaauuAACCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 78547 0.94 0.183914
Target:  5'- ---cAAAGCCCCUUAAUUGGGGCUUUu -3'
miRNA:   3'- uuauUUUCGGGGAAUUAACCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 107007 0.94 0.179016
Target:  5'- ---cAGAGCCCCUUAAUUGGGGCUUUu -3'
miRNA:   3'- uuauUUUCGGGGAAUUAACCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 142863 1.01 0.073002
Target:  5'- cAUAAAAGCCCCUUAAUUGGGGCUUUu -3'
miRNA:   3'- uUAUUUUCGGGGAAUUAACCCCGAAA- -5'
22548 5' -46.7 NC_005083.1 + 126282 1.03 0.059642
Target:  5'- uAAUAAAAGCCCCUUAAUUGGGGCUUUu -3'
miRNA:   3'- -UUAUUUUCGGGGAAUUAACCCCGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.