Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22549 | 3' | -44.7 | NC_005083.1 | + | 207883 | 0.66 | 1 |
Target: 5'- gCAGGUCAaacaaugaUUGGucaAGGCACGgGCGACg- -3' miRNA: 3'- -GUCUAGU--------AACU---UUCGUGUaUGCUGag -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 179906 | 0.66 | 1 |
Target: 5'- aAGAguaCAUUGAcAAGCACGUuaACGugUa -3' miRNA: 3'- gUCUa--GUAACU-UUCGUGUA--UGCugAg -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 105763 | 0.66 | 1 |
Target: 5'- aCAGAguacuugaAUUGGAGucGCAguUGCGGCUCu -3' miRNA: 3'- -GUCUag------UAACUUU--CGUguAUGCUGAG- -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 31296 | 0.66 | 1 |
Target: 5'- gAGAUCAUUGAAGuCAUcgaagGCGACa- -3' miRNA: 3'- gUCUAGUAACUUUcGUGua---UGCUGag -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 68867 | 0.67 | 1 |
Target: 5'- gAGAcaCAUUGGuuAGCugGUaGCGACUCu -3' miRNA: 3'- gUCUa-GUAACUu-UCGugUA-UGCUGAG- -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 45491 | 0.66 | 1 |
Target: 5'- --aGUCAUUGAGccAGUACGUGCG-CUa -3' miRNA: 3'- gucUAGUAACUU--UCGUGUAUGCuGAg -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 79635 | 0.69 | 0.99999 |
Target: 5'- uGGGUUuUUGAAGGCACAcGCGAa-- -3' miRNA: 3'- gUCUAGuAACUUUCGUGUaUGCUgag -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 51377 | 0.69 | 0.999973 |
Target: 5'- uGGAUCG-UGAGguacuGGCACGUACuGGCUUc -3' miRNA: 3'- gUCUAGUaACUU-----UCGUGUAUG-CUGAG- -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 42780 | 0.71 | 0.999756 |
Target: 5'- aAGAUCGcaUUGcgcaaauuGCACAUGCGugUCa -3' miRNA: 3'- gUCUAGU--AACuuu-----CGUGUAUGCugAG- -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 9236 | 0.72 | 0.999237 |
Target: 5'- -uGGUCuggUG-AAGCACAUACaGACUCu -3' miRNA: 3'- guCUAGua-ACuUUCGUGUAUG-CUGAG- -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 46574 | 0.72 | 0.999237 |
Target: 5'- aCAGcgCGUUaaGAAAGCGucUGCGACUCu -3' miRNA: 3'- -GUCuaGUAA--CUUUCGUguAUGCUGAG- -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 161576 | 0.73 | 0.997958 |
Target: 5'- gAGuucuUCA---GGAGCGCAUACGGCUCa -3' miRNA: 3'- gUCu---AGUaacUUUCGUGUAUGCUGAG- -5' |
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22549 | 3' | -44.7 | NC_005083.1 | + | 214423 | 1.12 | 0.036839 |
Target: 5'- uCAGAUCAUUGAAAGCACAUACGACUCg -3' miRNA: 3'- -GUCUAGUAACUUUCGUGUAUGCUGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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