miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22549 5' -43.2 NC_005083.1 + 241494 0.67 1
Target:  5'- --aUAUCACCAGUcggUGCaUUCUGAcuUGAAg -3'
miRNA:   3'- cgcAUAGUGGUUA---ACG-AAGAUU--ACUU- -5'
22549 5' -43.2 NC_005083.1 + 157747 0.67 1
Target:  5'- uUGUAUUugCGAUUGgUUCUGcgGGu -3'
miRNA:   3'- cGCAUAGugGUUAACgAAGAUuaCUu -5'
22549 5' -43.2 NC_005083.1 + 31001 0.66 1
Target:  5'- aGCGUG-CGCCGucUGCUUUUAGUu-- -3'
miRNA:   3'- -CGCAUaGUGGUuaACGAAGAUUAcuu -5'
22549 5' -43.2 NC_005083.1 + 50950 0.66 1
Target:  5'- uCGUAgUCAagcugaccaaCGAUUGUUUCUGGUGAAa -3'
miRNA:   3'- cGCAU-AGUg---------GUUAACGAAGAUUACUU- -5'
22549 5' -43.2 NC_005083.1 + 210098 0.69 0.999999
Target:  5'- -gGUGaaagCAUCAAUggUGCUUCUGGUGAc -3'
miRNA:   3'- cgCAUa---GUGGUUA--ACGAAGAUUACUu -5'
22549 5' -43.2 NC_005083.1 + 3195 0.69 0.999999
Target:  5'- aGCGUuUCugUAGUUcaGCUUCUGAuuUGAAa -3'
miRNA:   3'- -CGCAuAGugGUUAA--CGAAGAUU--ACUU- -5'
22549 5' -43.2 NC_005083.1 + 237488 0.7 0.999997
Target:  5'- gGCGUGUUGCUuuGAUUGUUUC-GAUGAu -3'
miRNA:   3'- -CGCAUAGUGG--UUAACGAAGaUUACUu -5'
22549 5' -43.2 NC_005083.1 + 217255 0.71 0.999986
Target:  5'- uCGUGUUACCAAUUGUUUCg------ -3'
miRNA:   3'- cGCAUAGUGGUUAACGAAGauuacuu -5'
22549 5' -43.2 NC_005083.1 + 242121 0.75 0.997819
Target:  5'- aCGUAUCGCCAAaagacUUGCUUCgu-UGGAc -3'
miRNA:   3'- cGCAUAGUGGUU-----AACGAAGauuACUU- -5'
22549 5' -43.2 NC_005083.1 + 13586 0.77 0.993025
Target:  5'- gGCGaUGUaGCCGcuAUUGCUUCUGGUGAAa -3'
miRNA:   3'- -CGC-AUAgUGGU--UAACGAAGAUUACUU- -5'
22549 5' -43.2 NC_005083.1 + 214457 1.1 0.067253
Target:  5'- gGCGUAUCACCAAUUGCUUCUAAUGAAc -3'
miRNA:   3'- -CGCAUAGUGGUUAACGAAGAUUACUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.