miRNA: 3'- uACGUu-----------CUGGGGcaCUGGa---AGGCGAG- -5'
miRNA: 3'- -UACGUUCUGGGGCAcUGg--AAGGcgag -5'
miRNA: 3'- uaCGUUCUGG---GGCA-CUGGAA--------GGCGAg -5'
miRNA: 3'- uACGUUCU--GGGGC--ACUGGAa---GGCGag -5'
miRNA: 3'- -UACGUUCUGGGGCACUGGAAGGCGAG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2255 | 5' | -57 | NC_001405.1 | + | 15358 | 0.66 | 0.462974 |
|
Target: 5'- uUGCAuacaacuacggcGACCCUcaGACCgggaUCCGCUCa -3' miRNA: 3'- uACGUu-----------CUGGGGcaCUGGa---AGGCGAG- -5' |
|||||||
| 2255 | 5' | -57 | NC_001405.1 | + | 10965 | 0.68 | 0.33344 |
|
Target: 5'- cAUGCAAGACCCCGUuGCaaaUUCCu--- -3' miRNA: 3'- -UACGUUCUGGGGCAcUGg--AAGGcgag -5' |
|||||||
| 2255 | 5' | -57 | NC_001405.1 | + | 7865 | 0.69 | 0.301206 |
|
Target: 5'- -cGCGAGACCuagCCGUgGACCUUggaugggaCCGCUg -3' miRNA: 3'- uaCGUUCUGG---GGCA-CUGGAA--------GGCGAg -5' |
|||||||
| 2255 | 5' | -57 | NC_001405.1 | + | 8429 | 0.7 | 0.257451 |
|
Target: 5'- cUGCAGGAgcUCCCGccUGACCUgucgCCGCg- -3' miRNA: 3'- uACGUUCU--GGGGC--ACUGGAa---GGCGag -5' |
|||||||
| 2255 | 5' | -57 | NC_001405.1 | + | 15467 | 1.07 | 0.000477 |
|
Target: 5'- gAUGCAAGACCCCGUGACCUUCCGCUCc -3' miRNA: 3'- -UACGUUCUGGGGCACUGGAAGGCGAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home