miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22551 5' -60.8 NC_005091.1 + 50818 0.66 0.438962
Target:  5'- aAGCGu-GCGGCCGUcGuGCGCGCGgCUa -3'
miRNA:   3'- cUUGCucCGUCGGCA-C-CGCGUGCgGA- -5'
22551 5' -60.8 NC_005091.1 + 24794 0.66 0.438962
Target:  5'- --cCGAGGaauuccGCCGUGcuGCGCAgGCCg -3'
miRNA:   3'- cuuGCUCCgu----CGGCAC--CGCGUgCGGa -5'
22551 5' -60.8 NC_005091.1 + 52534 0.66 0.429614
Target:  5'- -cAUGGGGUcGCCGcccGGCGCGC-CCUg -3'
miRNA:   3'- cuUGCUCCGuCGGCa--CCGCGUGcGGA- -5'
22551 5' -60.8 NC_005091.1 + 29603 0.66 0.428686
Target:  5'- aGGCGAcGCgcaacgaccucgaAGCUGUgaucGGCGCGCGCCa -3'
miRNA:   3'- cUUGCUcCG-------------UCGGCA----CCGCGUGCGGa -5'
22551 5' -60.8 NC_005091.1 + 54926 0.66 0.420384
Target:  5'- -uGCGGGGauuuugGGCUGaUGGCGC-CGCCc -3'
miRNA:   3'- cuUGCUCCg-----UCGGC-ACCGCGuGCGGa -5'
22551 5' -60.8 NC_005091.1 + 45800 0.66 0.420384
Target:  5'- cGGAaGAGcaGUAGCCGgcgcGGCGCGCgGCCg -3'
miRNA:   3'- -CUUgCUC--CGUCGGCa---CCGCGUG-CGGa -5'
22551 5' -60.8 NC_005091.1 + 52110 0.66 0.411275
Target:  5'- uGAAa-AGGCGGCCGUcgccGGCGCgggGCGCg- -3'
miRNA:   3'- -CUUgcUCCGUCGGCA----CCGCG---UGCGga -5'
22551 5' -60.8 NC_005091.1 + 48614 0.66 0.41037
Target:  5'- --uCGGGGCGGCCGUcggggucccauccGGCGagGCGCg- -3'
miRNA:   3'- cuuGCUCCGUCGGCA-------------CCGCg-UGCGga -5'
22551 5' -60.8 NC_005091.1 + 36345 0.67 0.36678
Target:  5'- uGGCGucguGGCGGCguucaucuCGUGGCGCAaacucguCGCCa -3'
miRNA:   3'- cUUGCu---CCGUCG--------GCACCGCGU-------GCGGa -5'
22551 5' -60.8 NC_005091.1 + 33599 0.68 0.319588
Target:  5'- aAACGcAGGCAGCCGUGaUGCggaucgAUGCCg -3'
miRNA:   3'- cUUGC-UCCGUCGGCACcGCG------UGCGGa -5'
22551 5' -60.8 NC_005091.1 + 9553 0.68 0.319588
Target:  5'- uGACGAGGCuGCCGUGuCGgCA-GCCa -3'
miRNA:   3'- cUUGCUCCGuCGGCACcGC-GUgCGGa -5'
22551 5' -60.8 NC_005091.1 + 11403 0.69 0.290271
Target:  5'- cGAACGcGGCAGCCGcucaacaaGGCGUugaaGCCg -3'
miRNA:   3'- -CUUGCuCCGUCGGCa-------CCGCGug--CGGa -5'
22551 5' -60.8 NC_005091.1 + 26259 0.69 0.269696
Target:  5'- cGAGCGAGGCgagcaucaaaAGCCuUGGCGUuCGCa- -3'
miRNA:   3'- -CUUGCUCCG----------UCGGcACCGCGuGCGga -5'
22551 5' -60.8 NC_005091.1 + 31762 0.69 0.263103
Target:  5'- --cCGAGGCGGCCG-GGUuccacggcacgaGCAgGCCg -3'
miRNA:   3'- cuuGCUCCGUCGGCaCCG------------CGUgCGGa -5'
22551 5' -60.8 NC_005091.1 + 2428 0.71 0.215003
Target:  5'- uGAACGAGauucGUGGCU-UGGCGCACGCUg -3'
miRNA:   3'- -CUUGCUC----CGUCGGcACCGCGUGCGGa -5'
22551 5' -60.8 NC_005091.1 + 16234 0.71 0.204218
Target:  5'- gGGACGAGGCcGCCGgcauGCGaUGCGCCg -3'
miRNA:   3'- -CUUGCUCCGuCGGCac--CGC-GUGCGGa -5'
22551 5' -60.8 NC_005091.1 + 23382 0.71 0.199004
Target:  5'- --cCGGGGCAGCCGacgcaGCGC-CGCCg -3'
miRNA:   3'- cuuGCUCCGUCGGCac---CGCGuGCGGa -5'
22551 5' -60.8 NC_005091.1 + 17916 0.71 0.199004
Target:  5'- gGAACGuuuGUcGCCGUGGCGCGCaaGCCg -3'
miRNA:   3'- -CUUGCuc-CGuCGGCACCGCGUG--CGGa -5'
22551 5' -60.8 NC_005091.1 + 49278 0.72 0.179292
Target:  5'- -cACGAGGCGcaguucGUCG-GGCGUGCGCCg -3'
miRNA:   3'- cuUGCUCCGU------CGGCaCCGCGUGCGGa -5'
22551 5' -60.8 NC_005091.1 + 55837 0.72 0.179292
Target:  5'- aGAGCGGcGCAGCCGgucagcaacUGGCGCACgagcugcacgGCCUg -3'
miRNA:   3'- -CUUGCUcCGUCGGC---------ACCGCGUG----------CGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.