miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22553 3' -62 NC_005091.1 + 18357 0.66 0.41782
Target:  5'- cGUgGGUGCGaUGUauagCGUCacaacggcguACCCGGCa -3'
miRNA:   3'- uCAgCCACGCgACGg---GCAG----------UGGGCCG- -5'
22553 3' -62 NC_005091.1 + 19042 0.66 0.41514
Target:  5'- uAGUCGagaCGCUGCCCGcccacgcaguaagaUCGCCCacGGUg -3'
miRNA:   3'- -UCAGCcacGCGACGGGC--------------AGUGGG--CCG- -5'
22553 3' -62 NC_005091.1 + 4218 0.66 0.400156
Target:  5'- --cCGGcgGCGC-GCCCGUCACC-GuGCc -3'
miRNA:   3'- ucaGCCa-CGCGaCGGGCAGUGGgC-CG- -5'
22553 3' -62 NC_005091.1 + 26325 0.66 0.374571
Target:  5'- --cUGGcgGC-CUGCUCG-CGCCCGGCc -3'
miRNA:   3'- ucaGCCa-CGcGACGGGCaGUGGGCCG- -5'
22553 3' -62 NC_005091.1 + 30820 0.66 0.374571
Target:  5'- aAGUCGGacGUGCUGCCCuuguagaacagGUUcagcagcucgACCaCGGCg -3'
miRNA:   3'- -UCAGCCa-CGCGACGGG-----------CAG----------UGG-GCCG- -5'
22553 3' -62 NC_005091.1 + 4302 0.68 0.304694
Target:  5'- uGGUCGuGUucGCGCcGgCCGUCGucuuccuguuuCCCGGCu -3'
miRNA:   3'- -UCAGC-CA--CGCGaCgGGCAGU-----------GGGCCG- -5'
22553 3' -62 NC_005091.1 + 32019 0.68 0.297578
Target:  5'- aGGUCcuUGCG--GCCCGUCGCCUuGGCg -3'
miRNA:   3'- -UCAGccACGCgaCGGGCAGUGGG-CCG- -5'
22553 3' -62 NC_005091.1 + 18140 0.69 0.277007
Target:  5'- cGUCGGUcgGCGCgaGCuUCGcgGCCCGGCg -3'
miRNA:   3'- uCAGCCA--CGCGa-CG-GGCagUGGGCCG- -5'
22553 3' -62 NC_005091.1 + 17331 0.69 0.270406
Target:  5'- --cCGcGUaGCGCUGgCCGUUcagcuucagauuGCCCGGCg -3'
miRNA:   3'- ucaGC-CA-CGCGACgGGCAG------------UGGGCCG- -5'
22553 3' -62 NC_005091.1 + 23466 0.69 0.257586
Target:  5'- -uUCGGcgGCGCUGCgUCGgcugC-CCCGGCu -3'
miRNA:   3'- ucAGCCa-CGCGACG-GGCa---GuGGGCCG- -5'
22553 3' -62 NC_005091.1 + 21515 0.69 0.257586
Target:  5'- ---aGcGUGCuCUGCCgCGUCGCCuCGGCu -3'
miRNA:   3'- ucagC-CACGcGACGG-GCAGUGG-GCCG- -5'
22553 3' -62 NC_005091.1 + 37496 0.69 0.251365
Target:  5'- --aUGGcGCGCUGCuuGUCGCUcaguuCGGCu -3'
miRNA:   3'- ucaGCCaCGCGACGggCAGUGG-----GCCG- -5'
22553 3' -62 NC_005091.1 + 14628 0.7 0.233441
Target:  5'- uGGUCGGcGUccaGUUGCaagcagCCGUCGcCCCGGCa -3'
miRNA:   3'- -UCAGCCaCG---CGACG------GGCAGU-GGGCCG- -5'
22553 3' -62 NC_005091.1 + 31859 0.7 0.216605
Target:  5'- cGUCGGcgGC-CUGCUCGUgccguggaACCCGGCc -3'
miRNA:   3'- uCAGCCa-CGcGACGGGCAg-------UGGGCCG- -5'
22553 3' -62 NC_005091.1 + 49683 0.7 0.216605
Target:  5'- -aUCGGUGCGUUGaUCGU--CCCGGCg -3'
miRNA:   3'- ucAGCCACGCGACgGGCAguGGGCCG- -5'
22553 3' -62 NC_005091.1 + 50299 0.71 0.181336
Target:  5'- cGUCGGcuCGCgGCCgaUCACCCGGCa -3'
miRNA:   3'- uCAGCCacGCGaCGGgcAGUGGGCCG- -5'
22553 3' -62 NC_005091.1 + 25228 0.74 0.125432
Target:  5'- cGGUCGGUGCguccggggcggccGCUGCaCCGgggucgaugCAgCCGGCg -3'
miRNA:   3'- -UCAGCCACG-------------CGACG-GGCa--------GUgGGCCG- -5'
22553 3' -62 NC_005091.1 + 1406 1.11 0.000189
Target:  5'- uAGUCGGUGCGCUGCCCGUCACCCGGCg -3'
miRNA:   3'- -UCAGCCACGCGACGGGCAGUGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.