miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22553 5' -55.2 NC_005091.1 + 28339 0.67 0.623744
Target:  5'- -cGCCaGCGCGUCGCcGGuuGCACCg- -3'
miRNA:   3'- aaCGG-CGUGCAGCGcUUcuUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 56334 0.68 0.601573
Target:  5'- -gGCCG-GCGUCGUGggGAuucagaugauACGCCg- -3'
miRNA:   3'- aaCGGCgUGCAGCGCuuCU----------UGUGGac -5'
22553 5' -55.2 NC_005091.1 + 51576 0.68 0.601573
Target:  5'- gUGUCGUGCGUCGCGugacGGGCGCg-- -3'
miRNA:   3'- aACGGCGUGCAGCGCuu--CUUGUGgac -5'
22553 5' -55.2 NC_005091.1 + 51841 0.68 0.590522
Target:  5'- aUGCUGCGCGagucgCGCGAAGuGCugaaGCUUGg -3'
miRNA:   3'- aACGGCGUGCa----GCGCUUCuUG----UGGAC- -5'
22553 5' -55.2 NC_005091.1 + 33506 0.68 0.568537
Target:  5'- -cGCaGCGCGcUCGCGAGGAcGC-CCUGc -3'
miRNA:   3'- aaCGgCGUGC-AGCGCUUCU-UGuGGAC- -5'
22553 5' -55.2 NC_005091.1 + 22224 0.69 0.546763
Target:  5'- cUGCUGCGCGUagaGCu--GGAUACCUGc -3'
miRNA:   3'- aACGGCGUGCAg--CGcuuCUUGUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 14474 0.69 0.546763
Target:  5'- -cGCCGUAgCGaUCGUGAcAGGGCugCUGa -3'
miRNA:   3'- aaCGGCGU-GC-AGCGCU-UCUUGugGAC- -5'
22553 5' -55.2 NC_005091.1 + 17067 0.69 0.543518
Target:  5'- -cGCUGCGCGUgcucucgaccucggCGCGAAGuguAGCACcCUGa -3'
miRNA:   3'- aaCGGCGUGCA--------------GCGCUUC---UUGUG-GAC- -5'
22553 5' -55.2 NC_005091.1 + 43879 0.7 0.483288
Target:  5'- -aGUCGCaACGcCGCGAAGAccugaACACCa- -3'
miRNA:   3'- aaCGGCG-UGCaGCGCUUCU-----UGUGGac -5'
22553 5' -55.2 NC_005091.1 + 31700 0.7 0.442998
Target:  5'- -cGCCGCcgauACGUU-CGAAGAACGCCa- -3'
miRNA:   3'- aaCGGCG----UGCAGcGCUUCUUGUGGac -5'
22553 5' -55.2 NC_005091.1 + 34192 0.71 0.42742
Target:  5'- aUGCCGCGCGacugauccgguucgCGCGGuucgaggauguGGAugACCUGa -3'
miRNA:   3'- aACGGCGUGCa-------------GCGCU-----------UCUugUGGAC- -5'
22553 5' -55.2 NC_005091.1 + 45252 0.72 0.342871
Target:  5'- -gGCCGCGCGUUGCGcccGGAAC-UCUGc -3'
miRNA:   3'- aaCGGCGUGCAGCGCu--UCUUGuGGAC- -5'
22553 5' -55.2 NC_005091.1 + 1368 1.05 0.001834
Target:  5'- cUUGCCGCACGUCGCGAAGAACACCUGc -3'
miRNA:   3'- -AACGGCGUGCAGCGCUUCUUGUGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.