miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22556 3' -54.1 NC_005091.1 + 21066 0.66 0.813798
Target:  5'- --uCGGGUCagCUUCGAUGG-CUGCu -3'
miRNA:   3'- guuGCCCAGaaGGGGCUAUCaGACGc -5'
22556 3' -54.1 NC_005091.1 + 14890 0.73 0.416793
Target:  5'- gCGGCGGGUCUcgUCCCCGAUccggguaucGUCgcugGCa -3'
miRNA:   3'- -GUUGCCCAGA--AGGGGCUAu--------CAGa---CGc -5'
22556 3' -54.1 NC_005091.1 + 15010 0.73 0.416793
Target:  5'- gCGGCGGGUCUcgUCCCCGAUccggguaucGUCgcugGCa -3'
miRNA:   3'- -GUUGCCCAGA--AGGGGCUAu--------CAGa---CGc -5'
22556 3' -54.1 NC_005091.1 + 15130 0.73 0.416793
Target:  5'- gCGGCGGGUCUcgUCCCCGAUccggguaucGUCgcugGCa -3'
miRNA:   3'- -GUUGCCCAGA--AGGGGCUAu--------CAGa---CGc -5'
22556 3' -54.1 NC_005091.1 + 2724 1.08 0.001673
Target:  5'- aCAACGGGUCUUCCCCGAUAGUCUGCGc -3'
miRNA:   3'- -GUUGCCCAGAAGGGGCUAUCAGACGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.