Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22557 | 3' | -57.2 | NC_005091.1 | + | 28260 | 0.72 | 0.257861 |
Target: 5'- gUGCAaccGGCGACGCGcuGGCGGCuUGCg -3' miRNA: 3'- aACGUc--UCGCUGUGC--UCGCCGuACGg -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 48720 | 0.72 | 0.251313 |
Target: 5'- cUGCAcGAGCGACACGGagauaCGGcCAUGCg -3' miRNA: 3'- aACGU-CUCGCUGUGCUc----GCC-GUACGg -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 4218 | 0.73 | 0.238629 |
Target: 5'- -gGCAGAG-GAUgaaGuGCGGCGUGCCg -3' miRNA: 3'- aaCGUCUCgCUGug-CuCGCCGUACGG- -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 55399 | 0.73 | 0.226484 |
Target: 5'- -aGCGcGAGC-ACGCGGGCGGCAaagcUGUCg -3' miRNA: 3'- aaCGU-CUCGcUGUGCUCGCCGU----ACGG- -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 39333 | 0.73 | 0.213169 |
Target: 5'- cUGCGuAGCGACACGcAGCGGCgcgaucacgagacaGUGCUu -3' miRNA: 3'- aACGUcUCGCUGUGC-UCGCCG--------------UACGG- -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 33422 | 0.74 | 0.198402 |
Target: 5'- -aGCAGGGCGuccuCGCGAGCGcGC-UGCg -3' miRNA: 3'- aaCGUCUCGCu---GUGCUCGC-CGuACGg -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 23511 | 0.74 | 0.183048 |
Target: 5'- aUGCAGAucaugGCGACGCGcGCGGCgAUGgCg -3' miRNA: 3'- aACGUCU-----CGCUGUGCuCGCCG-UACgG- -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 51600 | 0.75 | 0.177687 |
Target: 5'- -cGCAGAagcGCGGCACGGGCgcgauucGGCAugauaUGCCg -3' miRNA: 3'- aaCGUCU---CGCUGUGCUCG-------CCGU-----ACGG- -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 5097 | 0.75 | 0.164217 |
Target: 5'- cUGCGGGGCguGACAUGGGCGGCccGUa -3' miRNA: 3'- aACGUCUCG--CUGUGCUCGCCGuaCGg -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 44887 | 0.76 | 0.155469 |
Target: 5'- -aGCAG-GCGGUACGGGCGGCGgcaaggcgGCCg -3' miRNA: 3'- aaCGUCuCGCUGUGCUCGCCGUa-------CGG- -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 32042 | 0.8 | 0.076901 |
Target: 5'- -gGC-GAGCGACGCGAGCaGCAcguUGCCg -3' miRNA: 3'- aaCGuCUCGCUGUGCUCGcCGU---ACGG- -5' |
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22557 | 3' | -57.2 | NC_005091.1 | + | 3451 | 1.09 | 0.000543 |
Target: 5'- aUUGCAGAGCGACACGAGCGGCAUGCCu -3' miRNA: 3'- -AACGUCUCGCUGUGCUCGCCGUACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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