miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22558 5' -62.6 NC_005091.1 + 6867 0.69 0.233661
Target:  5'- aUGGCUGUcuccGUCGCaCGCGCagcggaagCGGGCGCGa -3'
miRNA:   3'- -ACUGGCAa---CGGCG-GCGCG--------GCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 40551 0.69 0.227945
Target:  5'- -cGCCGccGCCGagucgguaucCCGCGCCGAGCaCGg -3'
miRNA:   3'- acUGGCaaCGGC----------GGCGCGGCUCGcGC- -5'
22558 5' -62.6 NC_005091.1 + 44528 0.69 0.22738
Target:  5'- aGGCCGUcgcUGCCGUCGCcuucgucGCCGccCGCGu -3'
miRNA:   3'- aCUGGCA---ACGGCGGCG-------CGGCucGCGC- -5'
22558 5' -62.6 NC_005091.1 + 19534 0.69 0.222347
Target:  5'- gGuCCgGUUGCUGCgcuuuCGgGCCGAGCGCc -3'
miRNA:   3'- aCuGG-CAACGGCG-----GCgCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 12968 0.7 0.216867
Target:  5'- gGGCCacgGUCGuCCGgGCCGAGCgGCGu -3'
miRNA:   3'- aCUGGcaaCGGC-GGCgCGGCUCG-CGC- -5'
22558 5' -62.6 NC_005091.1 + 31687 0.7 0.211503
Target:  5'- aGACCGggUGCgauaccguaGCCGCGCCGGcCGCc -3'
miRNA:   3'- aCUGGCa-ACGg--------CGGCGCGGCUcGCGc -5'
22558 5' -62.6 NC_005091.1 + 55440 0.7 0.206253
Target:  5'- --gUCGcgGCCGCCGUcaGCCGGGCGUc -3'
miRNA:   3'- acuGGCaaCGGCGGCG--CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 22736 0.7 0.206253
Target:  5'- -aGCuCGUUccGCCGCCG-GCCGucAGCGCGg -3'
miRNA:   3'- acUG-GCAA--CGGCGGCgCGGC--UCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 50930 0.7 0.201116
Target:  5'- -cGCCGuUUGCCGCgucaGCGaCCGcaAGCGCGg -3'
miRNA:   3'- acUGGC-AACGGCGg---CGC-GGC--UCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 42331 0.7 0.201116
Target:  5'- -cGCCGUUGUCGUCGUaGCCcucggcGAGCGCu -3'
miRNA:   3'- acUGGCAACGGCGGCG-CGG------CUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 49877 0.67 0.311921
Target:  5'- cGAUCGcaucgGCagaaGCCGaucgaGCCGAGCGUGc -3'
miRNA:   3'- aCUGGCaa---CGg---CGGCg----CGGCUCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 10909 0.67 0.311921
Target:  5'- -aGCgCGUacggGUCGUCGCuGCCGAGUGCa -3'
miRNA:   3'- acUG-GCAa---CGGCGGCG-CGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 10107 0.68 0.297608
Target:  5'- aUGAacaaCGUggucGCCGUCGUGCCGGGUuccaguucgagGCGg -3'
miRNA:   3'- -ACUg---GCAa---CGGCGGCGCGGCUCG-----------CGC- -5'
22558 5' -62.6 NC_005091.1 + 32441 0.68 0.296205
Target:  5'- cUGACCGaagaacaacugGCCGCCGaaCGCCGuGCuGCu -3'
miRNA:   3'- -ACUGGCaa---------CGGCGGC--GCGGCuCG-CGc -5'
22558 5' -62.6 NC_005091.1 + 5292 0.67 0.342097
Target:  5'- cGGCCGUUGCaCuCCuuGCaCCGuGCGCGa -3'
miRNA:   3'- aCUGGCAACG-GcGG--CGcGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 25219 0.67 0.345228
Target:  5'- cGuCCGgggcgGCCGCUGCaccggggucgaugcaGCCG-GCGCGu -3'
miRNA:   3'- aCuGGCaa---CGGCGGCG---------------CGGCuCGCGC- -5'
22558 5' -62.6 NC_005091.1 + 53111 0.66 0.357956
Target:  5'- uUGAUCcg-GCUGCCGCGCUGGGUc-- -3'
miRNA:   3'- -ACUGGcaaCGGCGGCGCGGCUCGcgc -5'
22558 5' -62.6 NC_005091.1 + 45313 0.66 0.357956
Target:  5'- cGGCCGguagaCGaCagaGCGCCGAGCGUa -3'
miRNA:   3'- aCUGGCaacg-GC-Gg--CGCGGCUCGCGc -5'
22558 5' -62.6 NC_005091.1 + 57353 0.66 0.366077
Target:  5'- -uGCCGUgguccucCUGCCGaCGCCGGGuUGCGg -3'
miRNA:   3'- acUGGCAac-----GGCGGC-GCGGCUC-GCGC- -5'
22558 5' -62.6 NC_005091.1 + 26298 0.78 0.051586
Target:  5'- aGGCCGaagcUGCCGCCGCGUCGAaagaucucacaGCGCa -3'
miRNA:   3'- aCUGGCa---ACGGCGGCGCGGCU-----------CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.