miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22559 5' -62.7 NC_005091.1 + 6508 0.66 0.390696
Target:  5'- uGCCGCCCgacucgauccacaucGUGcCugGCCucaauCCGCGcuuuuGGGGc -3'
miRNA:   3'- -CGGCGGG---------------UACaGugCGG-----GGCGU-----CCCC- -5'
22559 5' -62.7 NC_005091.1 + 1077 0.66 0.387304
Target:  5'- aGCgCGCCCGcGUCGagcagGUCCUGCGGGacGGa -3'
miRNA:   3'- -CG-GCGGGUaCAGUg----CGGGGCGUCC--CC- -5'
22559 5' -62.7 NC_005091.1 + 48849 0.66 0.370639
Target:  5'- aUUGCCCGUGUCACGgCCUGCcgcguGuGGc -3'
miRNA:   3'- cGGCGGGUACAGUGCgGGGCGu----C-CCc -5'
22559 5' -62.7 NC_005091.1 + 52309 0.66 0.370639
Target:  5'- aGCCGC---UGUCAaagcCGCCCCGCAcuaccGGGu -3'
miRNA:   3'- -CGGCGgguACAGU----GCGGGGCGU-----CCCc -5'
22559 5' -62.7 NC_005091.1 + 52526 0.66 0.35447
Target:  5'- cGCCGCCCGg--CGCGCCCUGauuccacuGGa- -3'
miRNA:   3'- -CGGCGGGUacaGUGCGGGGCgu------CCcc -5'
22559 5' -62.7 NC_005091.1 + 49302 0.67 0.331162
Target:  5'- aGCaGCCCA--UCGCGUgCUGaCGGGGGa -3'
miRNA:   3'- -CGgCGGGUacAGUGCGgGGC-GUCCCC- -5'
22559 5' -62.7 NC_005091.1 + 49471 0.68 0.301872
Target:  5'- uGCCGCgCGUGUucagCGCgaGCCCCgGCAGGa- -3'
miRNA:   3'- -CGGCGgGUACA----GUG--CGGGG-CGUCCcc -5'
22559 5' -62.7 NC_005091.1 + 14876 0.68 0.274619
Target:  5'- aGUCGCCCAUGUUGCaucCUCgCGCAGGa- -3'
miRNA:   3'- -CGGCGGGUACAGUGc--GGG-GCGUCCcc -5'
22559 5' -62.7 NC_005091.1 + 14995 0.68 0.274619
Target:  5'- aGUCGCCCAUGUUGCaucCUCgCGCAGGa- -3'
miRNA:   3'- -CGGCGGGUACAGUGc--GGG-GCGUCCcc -5'
22559 5' -62.7 NC_005091.1 + 9328 0.69 0.243368
Target:  5'- cGCCGgCCG-GUCGCcCUUCGCAGGGc -3'
miRNA:   3'- -CGGCgGGUaCAGUGcGGGGCGUCCCc -5'
22559 5' -62.7 NC_005091.1 + 16728 0.69 0.236902
Target:  5'- gGCCGCuacgucguccCCGUGaUugGCCCacgcuccgguaggCGCGGGGGa -3'
miRNA:   3'- -CGGCG----------GGUACaGugCGGG-------------GCGUCCCC- -5'
22559 5' -62.7 NC_005091.1 + 40963 0.7 0.214596
Target:  5'- cCCGCCCAgcgcugcgugcgcUG-CGCGCCuCCGaacugaAGGGGa -3'
miRNA:   3'- cGGCGGGU-------------ACaGUGCGG-GGCg-----UCCCC- -5'
22559 5' -62.7 NC_005091.1 + 16210 0.71 0.180357
Target:  5'- -gCGCCCGccGUCGCGCCCgGauCAGGGa -3'
miRNA:   3'- cgGCGGGUa-CAGUGCGGGgC--GUCCCc -5'
22559 5' -62.7 NC_005091.1 + 21705 0.72 0.15461
Target:  5'- gGCCGCCCGccgGUCGaucCG-CuuGCGGGGGa -3'
miRNA:   3'- -CGGCGGGUa--CAGU---GCgGggCGUCCCC- -5'
22559 5' -62.7 NC_005091.1 + 6214 0.74 0.112587
Target:  5'- gGCCGCCCAcuucgcuUGaCugGCUCCuagcGCGGGGGc -3'
miRNA:   3'- -CGGCGGGU-------ACaGugCGGGG----CGUCCCC- -5'
22559 5' -62.7 NC_005091.1 + 5178 1.1 0.0002
Target:  5'- gGCCGCCCAUGUCACGCCCCGCAGGGGc -3'
miRNA:   3'- -CGGCGGGUACAGUGCGGGGCGUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.