miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2256 3' -55 NC_001405.1 + 16396 0.65 0.581164
Target:  5'- uAGCaCUAAuGgCCGcGGCuGCUGCGGCGg -3'
miRNA:   3'- -UCG-GAUUuCgGGCaCUG-UGACGUCGU- -5'
2256 3' -55 NC_001405.1 + 18915 0.65 0.57772
Target:  5'- aGGCgUccuGGCCCGaGAugugcauguaagacCACUGCGGCAu -3'
miRNA:   3'- -UCGgAuu-UCGGGCaCU--------------GUGACGUCGU- -5'
2256 3' -55 NC_001405.1 + 13633 0.66 0.569704
Target:  5'- aGGCCaAGcAGCuuGUccgaucuaGGCGCUGCGGCc -3'
miRNA:   3'- -UCGGaUU-UCGggCA--------CUGUGACGUCGu -5'
2256 3' -55 NC_001405.1 + 12498 0.66 0.569704
Target:  5'- uGCggAGAGCCgGuUGGC-CUGCGGCu -3'
miRNA:   3'- uCGgaUUUCGGgC-ACUGuGACGUCGu -5'
2256 3' -55 NC_001405.1 + 17098 0.68 0.45956
Target:  5'- gAGCCUGggcugGAGCCCGaGGucCGCgUGCGGCc -3'
miRNA:   3'- -UCGGAU-----UUCGGGCaCU--GUG-ACGUCGu -5'
2256 3' -55 NC_001405.1 + 7739 0.68 0.449146
Target:  5'- uGCUaauGGCCCGUGAC-CUGUggAGCu -3'
miRNA:   3'- uCGGauuUCGGGCACUGuGACG--UCGu -5'
2256 3' -55 NC_001405.1 + 26241 0.68 0.449146
Target:  5'- aAGCa-AGGGCCCGcGGCugcugauaggGCUGCGGCGg -3'
miRNA:   3'- -UCGgaUUUCGGGCaCUG----------UGACGUCGU- -5'
2256 3' -55 NC_001405.1 + 9717 0.69 0.361771
Target:  5'- aGGCU--GAGCaCCGUGGCGg-GCGGCAg -3'
miRNA:   3'- -UCGGauUUCG-GGCACUGUgaCGUCGU- -5'
2256 3' -55 NC_001405.1 + 17001 0.7 0.326915
Target:  5'- cGGCCUAAAGCgCGagucuggugacuUGGCACccaccgUGCAGCu -3'
miRNA:   3'- -UCGGAUUUCGgGC------------ACUGUG------ACGUCGu -5'
2256 3' -55 NC_001405.1 + 12053 0.74 0.17958
Target:  5'- cAGCCUGcaaaGGGCCCuggcUGGCACggGCAGCGg -3'
miRNA:   3'- -UCGGAU----UUCGGGc---ACUGUGa-CGUCGU- -5'
2256 3' -55 NC_001405.1 + 16939 1.09 0.000497
Target:  5'- uAGCCUAAAGCCCGUGACACUGCAGCAg -3'
miRNA:   3'- -UCGGAUUUCGGGCACUGUGACGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.