miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2256 5' -49.9 NC_001405.1 + 7235 0.66 0.865075
Target:  5'- gUAUGCcUGCGCgGccuUCCGGAGcGAGGUg -3'
miRNA:   3'- -GUGCGaACGUGgC---AGGCUUCuUUUCG- -5'
2256 5' -49.9 NC_001405.1 + 8209 0.66 0.864207
Target:  5'- gGCuGCUUGUccuugACCGUCUGGcugcucgAGggGAGUu -3'
miRNA:   3'- gUG-CGAACG-----UGGCAGGCU-------UCuuUUCG- -5'
2256 5' -49.9 NC_001405.1 + 9538 0.67 0.850869
Target:  5'- cCGCGCcgucaccgagaccaUGCGCCGUCgccgCGggGAGaugaucGAGCg -3'
miRNA:   3'- -GUGCGa-------------ACGUGGCAG----GCuuCUU------UUCG- -5'
2256 5' -49.9 NC_001405.1 + 5549 0.67 0.84721
Target:  5'- gGCGCgagaaaUACCGauUCCGggGAGuAGGCa -3'
miRNA:   3'- gUGCGaac---GUGGC--AGGCuuCUU-UUCG- -5'
2256 5' -49.9 NC_001405.1 + 16234 0.67 0.84721
Target:  5'- cCGCGCacgucGCACCGgCCGAcGGGcGGCc -3'
miRNA:   3'- -GUGCGaa---CGUGGCaGGCUuCUUuUCG- -5'
2256 5' -49.9 NC_001405.1 + 11564 0.69 0.744267
Target:  5'- gCACGCUUGUGgCG-CgCGAGGAGGuGGCu -3'
miRNA:   3'- -GUGCGAACGUgGCaG-GCUUCUUU-UCG- -5'
2256 5' -49.9 NC_001405.1 + 25040 0.7 0.640124
Target:  5'- aCGCGCgaGC-CUG-CCGAcuuGGAGGAGCg -3'
miRNA:   3'- -GUGCGaaCGuGGCaGGCU---UCUUUUCG- -5'
2256 5' -49.9 NC_001405.1 + 30475 0.71 0.581341
Target:  5'- gGCGCaagGCGgCGUCCGAGcGAGAAcGCc -3'
miRNA:   3'- gUGCGaa-CGUgGCAGGCUU-CUUUU-CG- -5'
2256 5' -49.9 NC_001405.1 + 17357 0.71 0.581341
Target:  5'- gGCGCccGCGCCGUUCcAGGAAGuacGGCa -3'
miRNA:   3'- gUGCGaaCGUGGCAGGcUUCUUU---UCG- -5'
2256 5' -49.9 NC_001405.1 + 33376 0.73 0.490239
Target:  5'- uGCGC-UGCugUGcCCGGAGGAcaAGGCg -3'
miRNA:   3'- gUGCGaACGugGCaGGCUUCUU--UUCG- -5'
2256 5' -49.9 NC_001405.1 + 13074 0.78 0.260985
Target:  5'- aCACGCUgcCACUGUCCGu-GAAGGGCg -3'
miRNA:   3'- -GUGCGAacGUGGCAGGCuuCUUUUCG- -5'
2256 5' -49.9 NC_001405.1 + 16973 1.14 0.001041
Target:  5'- cCACGCUUGCACCGUCCGAAGAAAAGCg -3'
miRNA:   3'- -GUGCGAACGUGGCAGGCUUCUUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.