miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22560 3' -54.5 NC_005091.1 + 13822 0.66 0.796099
Target:  5'- aCUUCGGC-UCGG-GCGGuuCGcCUGCg -3'
miRNA:   3'- aGAGGCUGaAGCCgCGCUu-GCaGACG- -5'
22560 3' -54.5 NC_005091.1 + 7572 0.66 0.776553
Target:  5'- uUCUUCGACUUa--CGCGAGCGcgUGCu -3'
miRNA:   3'- -AGAGGCUGAAgccGCGCUUGCagACG- -5'
22560 3' -54.5 NC_005091.1 + 983 0.66 0.776553
Target:  5'- aUCUCCGucccgcaggccuGC-UCGaCGCGGGCGcgCUGCu -3'
miRNA:   3'- -AGAGGC------------UGaAGCcGCGCUUGCa-GACG- -5'
22560 3' -54.5 NC_005091.1 + 46092 0.67 0.746162
Target:  5'- --aCCGAUaUCGGCGaaGACGagCUGCa -3'
miRNA:   3'- agaGGCUGaAGCCGCgcUUGCa-GACG- -5'
22560 3' -54.5 NC_005091.1 + 42663 0.67 0.725315
Target:  5'- -gUCCGAgCgugcgCGGCGCGGacaaGCGUCUucucgGCg -3'
miRNA:   3'- agAGGCU-Gaa---GCCGCGCU----UGCAGA-----CG- -5'
22560 3' -54.5 NC_005091.1 + 18309 0.68 0.704103
Target:  5'- gUUUCCGACgUUCuGcGCGCGGAC--CUGCu -3'
miRNA:   3'- -AGAGGCUG-AAG-C-CGCGCUUGcaGACG- -5'
22560 3' -54.5 NC_005091.1 + 32398 0.68 0.693389
Target:  5'- cUCUCCaugugGACUUCGGUuuCGGAUGUCgaGCc -3'
miRNA:   3'- -AGAGG-----CUGAAGCCGc-GCUUGCAGa-CG- -5'
22560 3' -54.5 NC_005091.1 + 2386 0.68 0.682616
Target:  5'- cCUUCGGCgUCGuCGCGAuGCGUCgugGCu -3'
miRNA:   3'- aGAGGCUGaAGCcGCGCU-UGCAGa--CG- -5'
22560 3' -54.5 NC_005091.1 + 29605 0.68 0.671796
Target:  5'- cUCgCCGAUcUCGGUGCGGGCGa--GCg -3'
miRNA:   3'- -AGaGGCUGaAGCCGCGCUUGCagaCG- -5'
22560 3' -54.5 NC_005091.1 + 32247 0.68 0.660939
Target:  5'- aUCUCgCGugUUCaGUGCGauGugGUUUGCc -3'
miRNA:   3'- -AGAG-GCugAAGcCGCGC--UugCAGACG- -5'
22560 3' -54.5 NC_005091.1 + 48592 0.68 0.660939
Target:  5'- -aUCCGGCga-GGCGCGAAUGgcgggaggGCg -3'
miRNA:   3'- agAGGCUGaagCCGCGCUUGCaga-----CG- -5'
22560 3' -54.5 NC_005091.1 + 55827 0.68 0.660939
Target:  5'- cCUCCGuuUUCgguuucaggGGCGCGGGcCGUCaGCg -3'
miRNA:   3'- aGAGGCugAAG---------CCGCGCUU-GCAGaCG- -5'
22560 3' -54.5 NC_005091.1 + 6015 0.68 0.650056
Target:  5'- gUCUauguaCGAgggCGGCGCGGACGUUcggGCg -3'
miRNA:   3'- -AGAg----GCUgaaGCCGCGCUUGCAGa--CG- -5'
22560 3' -54.5 NC_005091.1 + 51994 0.68 0.650056
Target:  5'- gCUCgCGAUggUCGGCGCuacGGCGUC-GCa -3'
miRNA:   3'- aGAG-GCUGa-AGCCGCGc--UUGCAGaCG- -5'
22560 3' -54.5 NC_005091.1 + 23134 0.69 0.639157
Target:  5'- aUCUCCGAuccgaaCUUCGuGCccgauGCGAugGCGUCgGCg -3'
miRNA:   3'- -AGAGGCU------GAAGC-CG-----CGCU--UGCAGaCG- -5'
22560 3' -54.5 NC_005091.1 + 29078 0.69 0.617349
Target:  5'- --aCCGAgUgcaguUCGGCGCGGagACGcCUGCc -3'
miRNA:   3'- agaGGCUgA-----AGCCGCGCU--UGCaGACG- -5'
22560 3' -54.5 NC_005091.1 + 12112 0.69 0.617349
Target:  5'- aCUCCuGaACUggcCGGCcaucUGAACGUCUGCg -3'
miRNA:   3'- aGAGG-C-UGAa--GCCGc---GCUUGCAGACG- -5'
22560 3' -54.5 NC_005091.1 + 49026 0.7 0.584755
Target:  5'- aUUCUGACgugCGGUgcuGCGGGCGcgCUGCu -3'
miRNA:   3'- aGAGGCUGaa-GCCG---CGCUUGCa-GACG- -5'
22560 3' -54.5 NC_005091.1 + 29992 0.7 0.584755
Target:  5'- aUCUUCGugUggaagcgagCGGUcaGCG-GCGUCUGCg -3'
miRNA:   3'- -AGAGGCugAa--------GCCG--CGCuUGCAGACG- -5'
22560 3' -54.5 NC_005091.1 + 14072 0.7 0.573957
Target:  5'- aUCUCCGGaacgggCGGUGCGAcgacgguaucGCGUaucaCUGCg -3'
miRNA:   3'- -AGAGGCUgaa---GCCGCGCU----------UGCA----GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.