miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22560 5' -60.5 NC_005091.1 + 55844 0.66 0.436415
Target:  5'- -cGCAGCCGGUCagcaacugGCGCacgaGCUGCAcGGc -3'
miRNA:   3'- uuCGUUGGCCAG--------CGCGa---CGGCGU-CCu -5'
22560 5' -60.5 NC_005091.1 + 956 0.66 0.436415
Target:  5'- gAAGCcgucguGCCGGaaccCGCGCUGaucuccgucCCGCAGGc -3'
miRNA:   3'- -UUCGu-----UGGCCa---GCGCGAC---------GGCGUCCu -5'
22560 5' -60.5 NC_005091.1 + 49304 0.66 0.427021
Target:  5'- aAAGCAGCCcaUCGCG-UGCUGaCGGGGg -3'
miRNA:   3'- -UUCGUUGGccAGCGCgACGGC-GUCCU- -5'
22560 5' -60.5 NC_005091.1 + 35122 0.66 0.408598
Target:  5'- cGAGCGGCCGGUCaGCaGCUugugguacgcGUCGCGGc- -3'
miRNA:   3'- -UUCGUUGGCCAG-CG-CGA----------CGGCGUCcu -5'
22560 5' -60.5 NC_005091.1 + 52955 0.66 0.39068
Target:  5'- cGAGCAGCCGuUCGCcauGCUcGCCGCGa-- -3'
miRNA:   3'- -UUCGUUGGCcAGCG---CGA-CGGCGUccu -5'
22560 5' -60.5 NC_005091.1 + 34434 0.67 0.381915
Target:  5'- cGGCGugCaGUacgacaaGCGCggccgGCCGCAGGGc -3'
miRNA:   3'- uUCGUugGcCAg------CGCGa----CGGCGUCCU- -5'
22560 5' -60.5 NC_005091.1 + 16013 0.67 0.364783
Target:  5'- cGGUcaGGCCGacaagcGUCGUGCUGCCGCcGGc -3'
miRNA:   3'- uUCG--UUGGC------CAGCGCGACGGCGuCCu -5'
22560 5' -60.5 NC_005091.1 + 23464 0.67 0.356418
Target:  5'- cGGCGgcGCUGcGUCGgcugccccgGCUGCCGUAGGAa -3'
miRNA:   3'- uUCGU--UGGC-CAGCg--------CGACGGCGUCCU- -5'
22560 5' -60.5 NC_005091.1 + 26491 0.67 0.34819
Target:  5'- cAGGCAACgcaGGcUGCgGCUGCCGCAGc- -3'
miRNA:   3'- -UUCGUUGg--CCaGCG-CGACGGCGUCcu -5'
22560 5' -60.5 NC_005091.1 + 40662 0.67 0.340098
Target:  5'- -cGCAcgaugucgaaACCGGcCGUGCUcGgCGCGGGAu -3'
miRNA:   3'- uuCGU----------UGGCCaGCGCGA-CgGCGUCCU- -5'
22560 5' -60.5 NC_005091.1 + 34345 0.68 0.308357
Target:  5'- -uGCGGCCGGcCGCGCUugucguacugcacGCCGCGu-- -3'
miRNA:   3'- uuCGUUGGCCaGCGCGA-------------CGGCGUccu -5'
22560 5' -60.5 NC_005091.1 + 38883 0.68 0.301699
Target:  5'- cGGCAGCCGGcgUCGCGgUGagaagaUGCAGGc -3'
miRNA:   3'- uUCGUUGGCC--AGCGCgACg-----GCGUCCu -5'
22560 5' -60.5 NC_005091.1 + 26409 0.68 0.294432
Target:  5'- uAGCGGCCGGgCGCGagcagGCCGcCAGaGAg -3'
miRNA:   3'- uUCGUUGGCCaGCGCga---CGGC-GUC-CU- -5'
22560 5' -60.5 NC_005091.1 + 9344 0.69 0.290138
Target:  5'- cGAGCAgucgaccauucgccgGCCGGUCGCcCU-UCGCAGGGc -3'
miRNA:   3'- -UUCGU---------------UGGCCAGCGcGAcGGCGUCCU- -5'
22560 5' -60.5 NC_005091.1 + 23569 0.69 0.286597
Target:  5'- cGGGCAAUCGGUCGCacaguucGCUG-CGCAGu- -3'
miRNA:   3'- -UUCGUUGGCCAGCG-------CGACgGCGUCcu -5'
22560 5' -60.5 NC_005091.1 + 50638 0.7 0.241176
Target:  5'- cGGCGGCCGGuUCGuCGUuccgcucgUGCCGCAGa- -3'
miRNA:   3'- uUCGUUGGCC-AGC-GCG--------ACGGCGUCcu -5'
22560 5' -60.5 NC_005091.1 + 45792 0.7 0.217133
Target:  5'- cAGUAGCCGGcgcggCGCGCgGCCGacgcguaCAGGAg -3'
miRNA:   3'- uUCGUUGGCCa----GCGCGaCGGC-------GUCCU- -5'
22560 5' -60.5 NC_005091.1 + 12145 0.72 0.181311
Target:  5'- uGGCGAUCGGgacgaagCGCGCguacUGCgGCGGGAu -3'
miRNA:   3'- uUCGUUGGCCa------GCGCG----ACGgCGUCCU- -5'
22560 5' -60.5 NC_005091.1 + 22979 0.73 0.138702
Target:  5'- uGGCGugCGGUUacgGCGUucUGCCGCAGGu -3'
miRNA:   3'- uUCGUugGCCAG---CGCG--ACGGCGUCCu -5'
22560 5' -60.5 NC_005091.1 + 5507 1.06 0.000456
Target:  5'- uAAGCAACCGGUCGCGCUGCCGCAGGAa -3'
miRNA:   3'- -UUCGUUGGCCAGCGCGACGGCGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.