miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22561 3' -54.9 NC_005091.1 + 51269 0.66 0.759673
Target:  5'- uCGCCGUCGcgCccGUGGGCGAu--- -3'
miRNA:   3'- uGCGGCAGCuaGaaCGCUCGCUucgu -5'
22561 3' -54.9 NC_005091.1 + 10203 0.66 0.759673
Target:  5'- gGCGUaaCGUCcGUCUcGCGcGCGAGGUAg -3'
miRNA:   3'- -UGCG--GCAGcUAGAaCGCuCGCUUCGU- -5'
22561 3' -54.9 NC_005091.1 + 24573 0.66 0.759673
Target:  5'- aGCGgUGUCGAUCgggGCG-GCGucguuGCAa -3'
miRNA:   3'- -UGCgGCAGCUAGaa-CGCuCGCuu---CGU- -5'
22561 3' -54.9 NC_005091.1 + 31736 0.66 0.759673
Target:  5'- aAUGCCGUaCGccuUC-UGCGAGCcguccGAGGCGg -3'
miRNA:   3'- -UGCGGCA-GCu--AGaACGCUCG-----CUUCGU- -5'
22561 3' -54.9 NC_005091.1 + 51865 0.66 0.753486
Target:  5'- gACGCCGggaaGAUCgcggaUGCGAugcugcgcgagucgcGCGAAGUg -3'
miRNA:   3'- -UGCGGCag--CUAGa----ACGCU---------------CGCUUCGu -5'
22561 3' -54.9 NC_005091.1 + 32662 0.66 0.728313
Target:  5'- uUGCCGUCGAcCUUGUGGuCGccGGCAu -3'
miRNA:   3'- uGCGGCAGCUaGAACGCUcGCu-UCGU- -5'
22561 3' -54.9 NC_005091.1 + 379 0.66 0.728313
Target:  5'- gACGCCGUCGugaagGCG-GCcAAGCGg -3'
miRNA:   3'- -UGCGGCAGCuagaaCGCuCGcUUCGU- -5'
22561 3' -54.9 NC_005091.1 + 57773 0.66 0.728313
Target:  5'- gACGCCGUCGugaagGCG-GCcAAGCGg -3'
miRNA:   3'- -UGCGGCAGCuagaaCGCuCGcUUCGU- -5'
22561 3' -54.9 NC_005091.1 + 39982 0.67 0.674266
Target:  5'- cGCGUCGcCGAUCUUGCGcagGGUGAc--- -3'
miRNA:   3'- -UGCGGCaGCUAGAACGC---UCGCUucgu -5'
22561 3' -54.9 NC_005091.1 + 54101 0.67 0.663293
Target:  5'- uGCGCCGUCGcgCUggaaaaGCGAGaCGccGGCc -3'
miRNA:   3'- -UGCGGCAGCuaGAa-----CGCUC-GCu-UCGu -5'
22561 3' -54.9 NC_005091.1 + 32029 0.67 0.663293
Target:  5'- gGC-CCGUCGc-CUUgGCGAGCGAcgcgAGCAg -3'
miRNA:   3'- -UGcGGCAGCuaGAA-CGCUCGCU----UCGU- -5'
22561 3' -54.9 NC_005091.1 + 23482 0.67 0.65229
Target:  5'- gGCGCUGcUCGGUCUguucgGCG-GCGcuGCGu -3'
miRNA:   3'- -UGCGGC-AGCUAGAa----CGCuCGCuuCGU- -5'
22561 3' -54.9 NC_005091.1 + 18490 0.68 0.630238
Target:  5'- aGCGUCagcuucgCGGUCUUGCGGuCGAAGUAg -3'
miRNA:   3'- -UGCGGca-----GCUAGAACGCUcGCUUCGU- -5'
22561 3' -54.9 NC_005091.1 + 29874 0.68 0.61921
Target:  5'- -aGCCGUCGcgCUgcaaugugaUGcCGAGUGAAGUu -3'
miRNA:   3'- ugCGGCAGCuaGA---------AC-GCUCGCUUCGu -5'
22561 3' -54.9 NC_005091.1 + 49049 0.69 0.564422
Target:  5'- cGCGCUGcUGcgCaccgugUGCGGGCGggGCGa -3'
miRNA:   3'- -UGCGGCaGCuaGa-----ACGCUCGCuuCGU- -5'
22561 3' -54.9 NC_005091.1 + 16066 0.69 0.564422
Target:  5'- -aGCCGUCGcAUCgca-GAGCGAcaAGCAg -3'
miRNA:   3'- ugCGGCAGC-UAGaacgCUCGCU--UCGU- -5'
22561 3' -54.9 NC_005091.1 + 29602 0.7 0.500546
Target:  5'- uUGCuCGcCGAUCUcggUGCGGGCG-AGCGg -3'
miRNA:   3'- uGCG-GCaGCUAGA---ACGCUCGCuUCGU- -5'
22561 3' -54.9 NC_005091.1 + 5694 0.7 0.47995
Target:  5'- uGCGCCGgaucaucccggCGAUCUccuuaGCGAGCGcAGCu -3'
miRNA:   3'- -UGCGGCa----------GCUAGAa----CGCUCGCuUCGu -5'
22561 3' -54.9 NC_005091.1 + 21699 0.71 0.449861
Target:  5'- cCGCCgGUCGAUCcgcUUGCGGG-GGAGUAu -3'
miRNA:   3'- uGCGG-CAGCUAG---AACGCUCgCUUCGU- -5'
22561 3' -54.9 NC_005091.1 + 4831 0.72 0.402131
Target:  5'- cGCGgCGgcaaCGGUCaaGCGGGCGAAGCc -3'
miRNA:   3'- -UGCgGCa---GCUAGaaCGCUCGCUUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.