miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22561 5' -59.8 NC_005091.1 + 40643 0.74 0.161706
Target:  5'- cCGUGCUCGGcGCggGAuaccgacuCGgCGGCGGCg -3'
miRNA:   3'- -GCGCGAGCC-CGuaCUu-------GCgGCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 42419 0.69 0.312036
Target:  5'- aGCGCUCgccgaGGGCuacGACGacaaCGGCGGCc -3'
miRNA:   3'- gCGCGAG-----CCCGuacUUGCg---GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 42723 0.66 0.486649
Target:  5'- aCGCG-UCGGGCAaGGACGaauacgaaGGCuGCu -3'
miRNA:   3'- -GCGCgAGCCCGUaCUUGCgg------CCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 44042 0.7 0.283356
Target:  5'- cCGCGCcaagGaGGCAcgaUGGACGUgGGCGGCu -3'
miRNA:   3'- -GCGCGag--C-CCGU---ACUUGCGgCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 44635 0.7 0.27652
Target:  5'- gGCGCUcgaagaagacgCGGGCGgcgacGAAgGCgaCGGCAGCg -3'
miRNA:   3'- gCGCGA-----------GCCCGUa----CUUgCG--GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 45814 0.67 0.447875
Target:  5'- aCG-GCUCGGuGCAUcggaaGAGCaguaGCCGGCgcGGCg -3'
miRNA:   3'- -GCgCGAGCC-CGUA-----CUUG----CGGCCG--UCG- -5'
22561 5' -59.8 NC_005091.1 + 46009 0.71 0.25049
Target:  5'- aGCGCUCGcGCAcc-GCGCCGgaacGCAGCg -3'
miRNA:   3'- gCGCGAGCcCGUacuUGCGGC----CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 47867 0.7 0.27652
Target:  5'- aCGCuGUUCGG-CAgu-ACGCCGGguGCg -3'
miRNA:   3'- -GCG-CGAGCCcGUacuUGCGGCCguCG- -5'
22561 5' -59.8 NC_005091.1 + 49821 0.67 0.410876
Target:  5'- cCGCGUUCGuGGCGgcuugcgcguUGAGCGC-GGCAcucaggGCa -3'
miRNA:   3'- -GCGCGAGC-CCGU----------ACUUGCGgCCGU------CG- -5'
22561 5' -59.8 NC_005091.1 + 51617 0.66 0.506625
Target:  5'- gGCGCgauucGGCAUGAuAUGCCGaaugaaGCGGCu -3'
miRNA:   3'- gCGCGagc--CCGUACU-UGCGGC------CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 52720 0.66 0.486649
Target:  5'- uCG-GUUCGGGCAU---CGCUugGGCGGCu -3'
miRNA:   3'- -GCgCGAGCCCGUAcuuGCGG--CCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 53172 0.68 0.393102
Target:  5'- aGCGCgCGGGCGcGAGCcuuCCGGU-GCa -3'
miRNA:   3'- gCGCGaGCCCGUaCUUGc--GGCCGuCG- -5'
22561 5' -59.8 NC_005091.1 + 53657 0.69 0.342867
Target:  5'- gCGCGC-CGGGguU--GCGCUGGCAaugguGCg -3'
miRNA:   3'- -GCGCGaGCCCguAcuUGCGGCCGU-----CG- -5'
22561 5' -59.8 NC_005091.1 + 54944 0.69 0.342867
Target:  5'- aCGCGCUCGc-CA--AGCGCCGcGCGGCu -3'
miRNA:   3'- -GCGCGAGCccGUacUUGCGGC-CGUCG- -5'
22561 5' -59.8 NC_005091.1 + 55019 0.69 0.319542
Target:  5'- gGCGCUUGGc---GAGCGCguugCGGCGGCg -3'
miRNA:   3'- gCGCGAGCCcguaCUUGCG----GCCGUCG- -5'
22561 5' -59.8 NC_005091.1 + 55807 0.67 0.444092
Target:  5'- gCGCcgacuGCUCGGGCAaguacgcgacgaaGAGCggcgcaGCCGGuCAGCa -3'
miRNA:   3'- -GCG-----CGAGCCCGUa------------CUUG------CGGCC-GUCG- -5'
22561 5' -59.8 NC_005091.1 + 56098 0.66 0.496592
Target:  5'- aGCGC--GGGCG-GGAgGUCGGcCGGCg -3'
miRNA:   3'- gCGCGagCCCGUaCUUgCGGCC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.