miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22562 5' -53.7 NC_005091.1 + 48643 0.66 0.806334
Target:  5'- gGCUgGCGcGCAGgCCCGaUGAgGAucGCUCg -3'
miRNA:   3'- -CGA-UGCaCGUCgGGGC-ACUaCU--UGAG- -5'
22562 5' -53.7 NC_005091.1 + 35198 0.66 0.786716
Target:  5'- aGCUGCugaccgGCcgcucGGCCCCGUGAucgUGGAC-Ca -3'
miRNA:   3'- -CGAUGca----CG-----UCGGGGCACU---ACUUGaG- -5'
22562 5' -53.7 NC_005091.1 + 49199 0.67 0.73499
Target:  5'- uGCggaugACGUGCGGCuucuccCCCGUcagcacgcGAUGGGCUg -3'
miRNA:   3'- -CGa----UGCACGUCG------GGGCA--------CUACUUGAg -5'
22562 5' -53.7 NC_005091.1 + 31399 0.67 0.73499
Target:  5'- --aACGUGCaaGGCCgCGUGAUcgcuGCUCg -3'
miRNA:   3'- cgaUGCACG--UCGGgGCACUAcu--UGAG- -5'
22562 5' -53.7 NC_005091.1 + 16731 0.67 0.713475
Target:  5'- cGCUACGU-CGuCCCCGUGAUuGGcccacGCUCc -3'
miRNA:   3'- -CGAUGCAcGUcGGGGCACUA-CU-----UGAG- -5'
22562 5' -53.7 NC_005091.1 + 26348 0.68 0.702589
Target:  5'- cGCUACGaugGCAGCCCCG-GcgGcccGCg- -3'
miRNA:   3'- -CGAUGCa--CGUCGGGGCaCuaCu--UGag -5'
22562 5' -53.7 NC_005091.1 + 41959 0.68 0.691632
Target:  5'- uGCcgACGUGCGGCCUCGacAUuuACUCg -3'
miRNA:   3'- -CGa-UGCACGUCGGGGCacUAcuUGAG- -5'
22562 5' -53.7 NC_005091.1 + 1155 0.69 0.602795
Target:  5'- cGCUaacugGCGUGCAGCcauCCCGgcgaaGAUGGAUUUc -3'
miRNA:   3'- -CGA-----UGCACGUCG---GGGCa----CUACUUGAG- -5'
22562 5' -53.7 NC_005091.1 + 11495 0.69 0.602795
Target:  5'- cGCUACGauaGCAGCCCCGauagccgcGAUGA--UCg -3'
miRNA:   3'- -CGAUGCa--CGUCGGGGCa-------CUACUugAG- -5'
22562 5' -53.7 NC_005091.1 + 51503 0.7 0.568529
Target:  5'- cGCUgcGCGUGCAGUCgcgauucaagcugCCGUaGAcGAACUCg -3'
miRNA:   3'- -CGA--UGCACGUCGG-------------GGCA-CUaCUUGAG- -5'
22562 5' -53.7 NC_005091.1 + 19185 0.72 0.453493
Target:  5'- uGCgGCGcuuUGCcguGGCCCCGUcGAUGAACUg -3'
miRNA:   3'- -CGaUGC---ACG---UCGGGGCA-CUACUUGAg -5'
22562 5' -53.7 NC_005091.1 + 8146 1.11 0.001013
Target:  5'- cGCUACGUGCAGCCCCGUGAUGAACUCc -3'
miRNA:   3'- -CGAUGCACGUCGGGGCACUACUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.