miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22563 3' -52 NC_005091.1 + 16157 0.66 0.895914
Target:  5'- --cGGCCGGCAcuacgaagUAUCU-CCGGGa -3'
miRNA:   3'- cauCUGGCCGUauaa----GUAGAcGGCCC- -5'
22563 3' -52 NC_005091.1 + 57642 0.66 0.893747
Target:  5'- -gAGACCGGCugccgggUCAacuUCUuucggcgaauccggGCCGGGc -3'
miRNA:   3'- caUCUGGCCGuaua---AGU---AGA--------------CGGCCC- -5'
22563 3' -52 NC_005091.1 + 33885 0.66 0.884076
Target:  5'- --cGcCCGGCGUacccaucggcuucagGUUCAgcuUCgUGCCGGGa -3'
miRNA:   3'- cauCuGGCCGUA---------------UAAGU---AG-ACGGCCC- -5'
22563 3' -52 NC_005091.1 + 18243 0.66 0.865041
Target:  5'- -gAGGUCGGCAg--UCGggaUUGCCGGGu -3'
miRNA:   3'- caUCUGGCCGUauaAGUa--GACGGCCC- -5'
22563 3' -52 NC_005091.1 + 41241 0.67 0.826463
Target:  5'- -aAGGCCGGUgaucgcgcgCAUCUGCCGa- -3'
miRNA:   3'- caUCUGGCCGuauaa----GUAGACGGCcc -5'
22563 3' -52 NC_005091.1 + 18426 0.67 0.824606
Target:  5'- -cAGGCCGGaCGUGUagucgaaaugcggaaUUGUC-GCCGGGu -3'
miRNA:   3'- caUCUGGCC-GUAUA---------------AGUAGaCGGCCC- -5'
22563 3' -52 NC_005091.1 + 7206 0.67 0.819926
Target:  5'- --cGGCCGGCAgauggcggcgcguUAccUUCGUCuUGCCGGc -3'
miRNA:   3'- cauCUGGCCGU-------------AU--AAGUAG-ACGGCCc -5'
22563 3' -52 NC_005091.1 + 33218 0.68 0.801685
Target:  5'- -gAGGCCGGCGUAaugcgcggcgacCAUCUGCCcgcgcagguugaaccGGGu -3'
miRNA:   3'- caUCUGGCCGUAUaa----------GUAGACGG---------------CCC- -5'
22563 3' -52 NC_005091.1 + 1307 0.68 0.791813
Target:  5'- ---aGCCGGCcgaggaaguccAUGUUCAUCaugGUCGGGa -3'
miRNA:   3'- caucUGGCCG-----------UAUAAGUAGa--CGGCCC- -5'
22563 3' -52 NC_005091.1 + 2505 0.69 0.760163
Target:  5'- -gAGAUCGGCGUGUuucUCAaucacguUCUGCCGc- -3'
miRNA:   3'- caUCUGGCCGUAUA---AGU-------AGACGGCcc -5'
22563 3' -52 NC_005091.1 + 51095 0.69 0.729365
Target:  5'- gGUAaACCGGCAUAacugCAcCgUGCCGGGc -3'
miRNA:   3'- -CAUcUGGCCGUAUaa--GUaG-ACGGCCC- -5'
22563 3' -52 NC_005091.1 + 56448 0.71 0.640885
Target:  5'- --cGGCUGGCGUAUggggCuUCUGgCGGGa -3'
miRNA:   3'- cauCUGGCCGUAUAa---GuAGACgGCCC- -5'
22563 3' -52 NC_005091.1 + 10015 0.74 0.481183
Target:  5'- cUGGAacCCGGCAcgacggcgaccacguUGUUCAUC-GCCGGGc -3'
miRNA:   3'- cAUCU--GGCCGU---------------AUAAGUAGaCGGCCC- -5'
22563 3' -52 NC_005091.1 + 44230 0.77 0.320272
Target:  5'- -aAGACCGGCAUAcgccccgaUCAUCUGCuCGGc -3'
miRNA:   3'- caUCUGGCCGUAUa-------AGUAGACG-GCCc -5'
22563 3' -52 NC_005091.1 + 8371 1.1 0.001859
Target:  5'- cGUAGACCGGCAUAUUCAUCUGCCGGGc -3'
miRNA:   3'- -CAUCUGGCCGUAUAAGUAGACGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.