miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22566 5' -54.8 NC_005091.1 + 49741 0.66 0.781559
Target:  5'- gGCCGUgcgUGAGUcguacgagacaAUCaCGGCUUGGCa -3'
miRNA:   3'- gCGGUAa--GCUCA-----------UAGcGCCGGAUCGc -5'
22566 5' -54.8 NC_005091.1 + 46285 0.66 0.780567
Target:  5'- uGCCAgagUUCGAGgccgcgcUCGUGGCCgucguacUGGUGa -3'
miRNA:   3'- gCGGU---AAGCUCau-----AGCGCCGG-------AUCGC- -5'
22566 5' -54.8 NC_005091.1 + 53064 0.66 0.771569
Target:  5'- gGUCAUggugCGGGguucgcugAUCGCGGCgagcaUGGCGa -3'
miRNA:   3'- gCGGUAa---GCUCa-------UAGCGCCGg----AUCGC- -5'
22566 5' -54.8 NC_005091.1 + 51941 0.66 0.771569
Target:  5'- aCGCCGUgacgCGAGUAgccgagugCGCuacGGCCUucgauauGCGu -3'
miRNA:   3'- -GCGGUAa---GCUCAUa-------GCG---CCGGAu------CGC- -5'
22566 5' -54.8 NC_005091.1 + 29987 0.66 0.740788
Target:  5'- gCGCCAUcuUCGuGUGgaagcgaGCGGUC-AGCGg -3'
miRNA:   3'- -GCGGUA--AGCuCAUag-----CGCCGGaUCGC- -5'
22566 5' -54.8 NC_005091.1 + 25928 0.67 0.719702
Target:  5'- gGUCGUUCGuucca-GCGGCCaGGCGa -3'
miRNA:   3'- gCGGUAAGCucauagCGCCGGaUCGC- -5'
22566 5' -54.8 NC_005091.1 + 22448 0.67 0.709024
Target:  5'- cCGCCuUUCGGGUcAUCuGCGGCUggucggucagcaUGGCu -3'
miRNA:   3'- -GCGGuAAGCUCA-UAG-CGCCGG------------AUCGc -5'
22566 5' -54.8 NC_005091.1 + 49673 0.67 0.698271
Target:  5'- cCGCCGUcaUCGGGUAUCG-GGUagAGCc -3'
miRNA:   3'- -GCGGUA--AGCUCAUAGCgCCGgaUCGc -5'
22566 5' -54.8 NC_005091.1 + 57774 0.67 0.687454
Target:  5'- aCGCCG-UCGuG-AagGCGGCCaAGCGg -3'
miRNA:   3'- -GCGGUaAGCuCaUagCGCCGGaUCGC- -5'
22566 5' -54.8 NC_005091.1 + 380 0.67 0.687454
Target:  5'- aCGCCG-UCGuG-AagGCGGCCaAGCGg -3'
miRNA:   3'- -GCGGUaAGCuCaUagCGCCGGaUCGC- -5'
22566 5' -54.8 NC_005091.1 + 16381 0.67 0.676585
Target:  5'- aCGCCAacc-AGUAcacgCGCGGCCaAGCGa -3'
miRNA:   3'- -GCGGUaagcUCAUa---GCGCCGGaUCGC- -5'
22566 5' -54.8 NC_005091.1 + 26648 0.68 0.665673
Target:  5'- gGUCGaUCGAGUcg-GCGGCCcGGCGu -3'
miRNA:   3'- gCGGUaAGCUCAuagCGCCGGaUCGC- -5'
22566 5' -54.8 NC_005091.1 + 9284 0.68 0.654731
Target:  5'- gCGCgAUUCGGGUcgC-CGGCUgcacGGCGa -3'
miRNA:   3'- -GCGgUAAGCUCAuaGcGCCGGa---UCGC- -5'
22566 5' -54.8 NC_005091.1 + 18893 0.68 0.639378
Target:  5'- aCGCCGgcacgauuccgcCGAGcAUCGCGGCCagucGCGg -3'
miRNA:   3'- -GCGGUaa----------GCUCaUAGCGCCGGau--CGC- -5'
22566 5' -54.8 NC_005091.1 + 48824 0.68 0.632793
Target:  5'- gCGCCGUaCGGccgAUgacaUGCGGCCUAGCu -3'
miRNA:   3'- -GCGGUAaGCUca-UA----GCGCCGGAUCGc -5'
22566 5' -54.8 NC_005091.1 + 57221 0.7 0.513999
Target:  5'- aGCCAgUCGGGcggcgaGUCGCGGaagCUGGCGu -3'
miRNA:   3'- gCGGUaAGCUCa-----UAGCGCCg--GAUCGC- -5'
22566 5' -54.8 NC_005091.1 + 41407 0.71 0.483028
Target:  5'- aGCCAUUCGucaAUgGCGGCUUcGGCGa -3'
miRNA:   3'- gCGGUAAGCucaUAgCGCCGGA-UCGC- -5'
22566 5' -54.8 NC_005091.1 + 26795 0.71 0.443198
Target:  5'- uCGCCAUaagcgguccgUCGAGgg-CGCGGCCaucGCGu -3'
miRNA:   3'- -GCGGUA----------AGCUCauaGCGCCGGau-CGC- -5'
22566 5' -54.8 NC_005091.1 + 18144 0.72 0.396132
Target:  5'- gGUCGgcgCGAGcuUCGCGGCCcGGCGa -3'
miRNA:   3'- gCGGUaa-GCUCauAGCGCCGGaUCGC- -5'
22566 5' -54.8 NC_005091.1 + 13553 1.08 0.001455
Target:  5'- uCGCCAUUCGAGUAUCGCGGCCUAGCGc -3'
miRNA:   3'- -GCGGUAAGCUCAUAGCGCCGGAUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.