miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22567 3' -54.2 NC_005091.1 + 10959 0.66 0.795531
Target:  5'- cCGCCGGguCGAGCUGUuucccgaGGU-CGAUCAu -3'
miRNA:   3'- -GCGGCCauGUUCGACG-------CCAaGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 16985 0.66 0.790615
Target:  5'- gGCUGGgcggacggagcguCGGGCUGgGGgaCGACCAc -3'
miRNA:   3'- gCGGCCau-----------GUUCGACgCCaaGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 29606 0.66 0.786652
Target:  5'- uCGCCgaucucGGUGCGGGCgaGCGGgagGGCCGu -3'
miRNA:   3'- -GCGG------CCAUGUUCGa-CGCCaagUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 1321 0.66 0.776633
Target:  5'- aCGCCGGgugACGGGCaGCGcacCGACUAc -3'
miRNA:   3'- -GCGGCCa--UGUUCGaCGCcaaGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 18139 0.66 0.766462
Target:  5'- aCGUCGGUcggcGCGAGCUucGCGGcccggCGAUCGa -3'
miRNA:   3'- -GCGGCCA----UGUUCGA--CGCCaa---GUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 5208 0.66 0.766462
Target:  5'- gCGCaCGGUGCAAGgaGUGcaaCGGCCGc -3'
miRNA:   3'- -GCG-GCCAUGUUCgaCGCcaaGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 53080 0.67 0.735153
Target:  5'- cCGuuGGUcGCGAGCauUGCGG--CGACCGu -3'
miRNA:   3'- -GCggCCA-UGUUCG--ACGCCaaGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 28961 0.67 0.735153
Target:  5'- uGCUucuGGUGCAgGGCUG-GG-UCAACCAu -3'
miRNA:   3'- gCGG---CCAUGU-UCGACgCCaAGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 56897 0.67 0.735153
Target:  5'- uGCCGucGCuGGCUGCGcGgugCAGCCAc -3'
miRNA:   3'- gCGGCcaUGuUCGACGC-Caa-GUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 33127 0.67 0.72449
Target:  5'- aCGCCuGUGCGAGUUGCGuGcgCugGACCu -3'
miRNA:   3'- -GCGGcCAUGUUCGACGC-CaaG--UUGGu -5'
22567 3' -54.2 NC_005091.1 + 11393 0.67 0.713735
Target:  5'- gGCCGcGU-CAcGCUGCGcUUCGGCCu -3'
miRNA:   3'- gCGGC-CAuGUuCGACGCcAAGUUGGu -5'
22567 3' -54.2 NC_005091.1 + 6704 0.67 0.702897
Target:  5'- gGCCGGccaACAccgcuuGGCUGCGGU-CGccgucGCCAa -3'
miRNA:   3'- gCGGCCa--UGU------UCGACGCCAaGU-----UGGU- -5'
22567 3' -54.2 NC_005091.1 + 9364 0.67 0.702897
Target:  5'- aGCCGGUcgGCGgccAGCgGCGaGcagUCGACCAu -3'
miRNA:   3'- gCGGCCA--UGU---UCGaCGC-Ca--AGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 55847 0.68 0.657853
Target:  5'- aGCCGGUcagcaacuggcgcACGAGCUGCacGGccUGACCAu -3'
miRNA:   3'- gCGGCCA-------------UGUUCGACG--CCaaGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 15848 0.69 0.603541
Target:  5'- gCGUCGGcaugcguguUGcCGAGCUGCGGUUCA-UCGa -3'
miRNA:   3'- -GCGGCC---------AU-GUUCGACGCCAAGUuGGU- -5'
22567 3' -54.2 NC_005091.1 + 34402 0.69 0.592493
Target:  5'- uGCUGGUACGGGUucgacagGCGGUcggUCGauACCAu -3'
miRNA:   3'- gCGGCCAUGUUCGa------CGCCA---AGU--UGGU- -5'
22567 3' -54.2 NC_005091.1 + 30706 0.7 0.548728
Target:  5'- uCGCCGGUAUAGGUgucGUGGUaCGugUAg -3'
miRNA:   3'- -GCGGCCAUGUUCGa--CGCCAaGUugGU- -5'
22567 3' -54.2 NC_005091.1 + 57151 0.71 0.464802
Target:  5'- uGCCGGU-CGAguucguGCUGCGGUccuUCAGCUc -3'
miRNA:   3'- gCGGCCAuGUU------CGACGCCA---AGUUGGu -5'
22567 3' -54.2 NC_005091.1 + 31538 0.72 0.448807
Target:  5'- uGCUGGcgcucguuacagcgACGAGCgUGCGGUaUCGACCAa -3'
miRNA:   3'- gCGGCCa-------------UGUUCG-ACGCCA-AGUUGGU- -5'
22567 3' -54.2 NC_005091.1 + 44884 0.72 0.406459
Target:  5'- aGgCGGUACGGGCgGCGGcaaggCGGCCGa -3'
miRNA:   3'- gCgGCCAUGUUCGaCGCCaa---GUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.