miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22567 5' -55.3 NC_005091.1 + 27255 0.66 0.74242
Target:  5'- --gCGUC-GCGCCGCAGUccgagaUACCAc -3'
miRNA:   3'- guaGCAGcCGCGGCGUCGaa----AUGGUc -5'
22567 5' -55.3 NC_005091.1 + 10794 0.66 0.74242
Target:  5'- uCAUCGggugcuugcguUCGaGCGCCGUAGCgaaguCCAu -3'
miRNA:   3'- -GUAGC-----------AGC-CGCGGCGUCGaaau-GGUc -5'
22567 5' -55.3 NC_005091.1 + 26401 0.66 0.710585
Target:  5'- gGUCugcugCGGCaGCCGCAGCcugcgUUGCCu- -3'
miRNA:   3'- gUAGca---GCCG-CGGCGUCGa----AAUGGuc -5'
22567 5' -55.3 NC_005091.1 + 18230 0.66 0.699804
Target:  5'- gAUCGcCGG-GCCGCgaAGCUcgGCCGa -3'
miRNA:   3'- gUAGCaGCCgCGGCG--UCGAaaUGGUc -5'
22567 5' -55.3 NC_005091.1 + 19629 0.66 0.688957
Target:  5'- uGUCGgCGGCGCucggcccgaaagCGCAGCa--ACCGGa -3'
miRNA:   3'- gUAGCaGCCGCG------------GCGUCGaaaUGGUC- -5'
22567 5' -55.3 NC_005091.1 + 23466 0.66 0.688957
Target:  5'- -uUCGgCGGCGCUGCgucGGCUgccCCGGc -3'
miRNA:   3'- guAGCaGCCGCGGCG---UCGAaauGGUC- -5'
22567 5' -55.3 NC_005091.1 + 26781 0.67 0.678055
Target:  5'- cCGUCGagGGCGCgGCcaucGCg-UACCAGa -3'
miRNA:   3'- -GUAGCagCCGCGgCGu---CGaaAUGGUC- -5'
22567 5' -55.3 NC_005091.1 + 52844 0.68 0.586865
Target:  5'- cCAUCGuUCGGCGCUccgacgauuuguuuGCAGCcg-GCCGc -3'
miRNA:   3'- -GUAGC-AGCCGCGG--------------CGUCGaaaUGGUc -5'
22567 5' -55.3 NC_005091.1 + 36870 0.69 0.557506
Target:  5'- uGUUGUCGGUGUCGCgcgAGCgc-GCCAu -3'
miRNA:   3'- gUAGCAGCCGCGGCG---UCGaaaUGGUc -5'
22567 5' -55.3 NC_005091.1 + 35227 0.69 0.545661
Target:  5'- -cUCGcggCGGCGCCGCgacgcguaccacaAGCUgcugACCGGc -3'
miRNA:   3'- guAGCa--GCCGCGGCG-------------UCGAaa--UGGUC- -5'
22567 5' -55.3 NC_005091.1 + 50295 0.69 0.53603
Target:  5'- cCAUCGUCGGC-UCGCGGCcg-AUCAc -3'
miRNA:   3'- -GUAGCAGCCGcGGCGUCGaaaUGGUc -5'
22567 5' -55.3 NC_005091.1 + 34771 0.7 0.494019
Target:  5'- gCAUCGUgGGCG-CGCAGU---ACCGGc -3'
miRNA:   3'- -GUAGCAgCCGCgGCGUCGaaaUGGUC- -5'
22567 5' -55.3 NC_005091.1 + 24950 0.7 0.463522
Target:  5'- --aCGauUCGGcCGCCGCAGUgccgACCAGu -3'
miRNA:   3'- guaGC--AGCC-GCGGCGUCGaaa-UGGUC- -5'
22567 5' -55.3 NC_005091.1 + 17408 0.7 0.452588
Target:  5'- -cUCGUCGGCGCUGCGuucgccuGCaaUACCGa -3'
miRNA:   3'- guAGCAGCCGCGGCGU-------CGaaAUGGUc -5'
22567 5' -55.3 NC_005091.1 + 14265 0.71 0.434039
Target:  5'- uGUCGUCGGCGa-GCGGCcagUACCu- -3'
miRNA:   3'- gUAGCAGCCGCggCGUCGaa-AUGGuc -5'
22567 5' -55.3 NC_005091.1 + 49878 0.72 0.369723
Target:  5'- gCAUCGUCGGCcCCuGCGGUgcggUGCCGa -3'
miRNA:   3'- -GUAGCAGCCGcGG-CGUCGaa--AUGGUc -5'
22567 5' -55.3 NC_005091.1 + 2380 0.73 0.312239
Target:  5'- gCGUCGUCGcgauGCGUCGUGGCUucUUGCCAc -3'
miRNA:   3'- -GUAGCAGC----CGCGGCGUCGA--AAUGGUc -5'
22567 5' -55.3 NC_005091.1 + 13901 0.74 0.297111
Target:  5'- cCGUCGUCuGGUugaaCCGCAGCUUgUACCGGc -3'
miRNA:   3'- -GUAGCAG-CCGc---GGCGUCGAA-AUGGUC- -5'
22567 5' -55.3 NC_005091.1 + 35150 0.75 0.261797
Target:  5'- gCGUCG-CGGCGCCGCcGCgagguacUGCCGGc -3'
miRNA:   3'- -GUAGCaGCCGCGGCGuCGaa-----AUGGUC- -5'
22567 5' -55.3 NC_005091.1 + 13955 1.09 0.001058
Target:  5'- gCAUCGUCGGCGCCGCAGCUUUACCAGa -3'
miRNA:   3'- -GUAGCAGCCGCGGCGUCGAAAUGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.