miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22568 3' -55.4 NC_005091.1 + 15397 0.66 0.710854
Target:  5'- -gUCGCU-CGUGG-UGGUAACGUCc- -3'
miRNA:   3'- uuGGCGAaGCACCuGCCGUUGCAGcu -5'
22568 3' -55.4 NC_005091.1 + 33039 0.66 0.700121
Target:  5'- cGCCGCUcUCGcGGAUGaUGAUGUCGAa -3'
miRNA:   3'- uUGGCGA-AGCaCCUGCcGUUGCAGCU- -5'
22568 3' -55.4 NC_005091.1 + 28052 0.66 0.700121
Target:  5'- ---gGCUUCGUGu-CGGUGAUGUCGGc -3'
miRNA:   3'- uuggCGAAGCACcuGCCGUUGCAGCU- -5'
22568 3' -55.4 NC_005091.1 + 55354 0.66 0.699044
Target:  5'- aGACCGaaUCGaagacgugccgacUGGAUGGCAACGaggCGAc -3'
miRNA:   3'- -UUGGCgaAGC-------------ACCUGCCGUUGCa--GCU- -5'
22568 3' -55.4 NC_005091.1 + 11422 0.67 0.667571
Target:  5'- -cCUGUUUCGcGG-CGGCcACGUCGGc -3'
miRNA:   3'- uuGGCGAAGCaCCuGCCGuUGCAGCU- -5'
22568 3' -55.4 NC_005091.1 + 25100 0.67 0.667571
Target:  5'- uGACCGCUgCGUucacgGGAUGGCAGa-UCGGg -3'
miRNA:   3'- -UUGGCGAaGCA-----CCUGCCGUUgcAGCU- -5'
22568 3' -55.4 NC_005091.1 + 50768 0.67 0.645688
Target:  5'- gAGCCGCagUUCGcGGGCcagcuuGGCAACGcUCGGc -3'
miRNA:   3'- -UUGGCG--AAGCaCCUG------CCGUUGC-AGCU- -5'
22568 3' -55.4 NC_005091.1 + 53902 0.67 0.634723
Target:  5'- aAACCGCUUCGUcGGACaGCGgauuGCGcCa- -3'
miRNA:   3'- -UUGGCGAAGCA-CCUGcCGU----UGCaGcu -5'
22568 3' -55.4 NC_005091.1 + 20002 0.68 0.612796
Target:  5'- cACUGC--CGUGGGCGGCGAUugguUCGAg -3'
miRNA:   3'- uUGGCGaaGCACCUGCCGUUGc---AGCU- -5'
22568 3' -55.4 NC_005091.1 + 48621 0.69 0.558423
Target:  5'- gGAUCGC-UCG-GGGCGGC--CGUCGGg -3'
miRNA:   3'- -UUGGCGaAGCaCCUGCCGuuGCAGCU- -5'
22568 3' -55.4 NC_005091.1 + 45933 0.7 0.49516
Target:  5'- cGGCCGCUUCGUGucCGGaugGAUGUgGAa -3'
miRNA:   3'- -UUGGCGAAGCACcuGCCg--UUGCAgCU- -5'
22568 3' -55.4 NC_005091.1 + 19143 0.7 0.455825
Target:  5'- cACCGUgggcgaucuuacugCGUGGGCgGGCAGCGUCu- -3'
miRNA:   3'- uUGGCGaa------------GCACCUG-CCGUUGCAGcu -5'
22568 3' -55.4 NC_005091.1 + 17989 0.71 0.41636
Target:  5'- -uCCGCUucaacguacgUCGUGGACGGCAGac-CGAa -3'
miRNA:   3'- uuGGCGA----------AGCACCUGCCGUUgcaGCU- -5'
22568 3' -55.4 NC_005091.1 + 49819 0.76 0.202929
Target:  5'- cGCCGCgUUCGUGG-CGGCuugcGCGUUGAg -3'
miRNA:   3'- uUGGCG-AAGCACCuGCCGu---UGCAGCU- -5'
22568 3' -55.4 NC_005091.1 + 14172 1.07 0.001559
Target:  5'- gAACCGCUUCGUGGACGGCAACGUCGAu -3'
miRNA:   3'- -UUGGCGAAGCACCUGCCGUUGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.