Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 34099 | 0.66 | 0.7361 |
|
Target: 5'- gCGUACGACGCGUugauGaCGGCguuuugaagCGACa -3' miRNA: 3'- -GCAUGCUGUGCGuu--CcGCCGa--------GCUGg -5' |
|||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 21639 | 0.66 | 0.745359 |
|
Target: 5'- aCGUACGACAucaugguCGCca-GCGGCUacaccccgGACCa -3' miRNA: 3'- -GCAUGCUGU-------GCGuucCGCCGAg-------CUGG- -5' |
|||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 44134 | 0.66 | 0.746382 |
|
Target: 5'- aGUACGuCGCGCAgucugucgaauGGGCGcagucGCUucccggCGACCu -3' miRNA: 3'- gCAUGCuGUGCGU-----------UCCGC-----CGA------GCUGG- -5' |
|||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 56451 | 0.66 | 0.754528 |
|
Target: 5'- -cUGCGGCugGCGuauggggcuucuGGCGGgaCGGCa -3' miRNA: 3'- gcAUGCUGugCGUu-----------CCGCCgaGCUGg -5' |
|||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 9240 | 0.66 | 0.756553 |
|
Target: 5'- gGUGCGGCccuGCGaAGGGCGaC-CGGCCg -3' miRNA: 3'- gCAUGCUG---UGCgUUCCGCcGaGCUGG- -5' |
|||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 31874 | 0.66 | 0.756553 |
|
Target: 5'- cCGUGuCGuCGCGCucgucGGCGGCcugcUCGugCc -3' miRNA: 3'- -GCAU-GCuGUGCGuu---CCGCCG----AGCugG- -5' |
|||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 807 | 0.66 | 0.756553 |
|
Target: 5'- uCGUGCGcuGCGCugccgcguggguGUAcGGCGGCgauccugCGGCCa -3' miRNA: 3'- -GCAUGC--UGUG------------CGUuCCGCCGa------GCUGG- -5' |
|||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 8112 | 0.66 | 0.7666 |
|
Target: 5'- uCGaACGACAgGUAAuGCaGGC-CGACCu -3' miRNA: 3'- -GCaUGCUGUgCGUUcCG-CCGaGCUGG- -5' |
|||||||
| 22569 | 3' | -55.5 | NC_005091.1 | + | 51579 | 0.66 | 0.7666 |
|
Target: 5'- uCGUGCGucgcgugacggGCGCGCAgaAGcGCGGCaCGGgCg -3' miRNA: 3'- -GCAUGC-----------UGUGCGU--UC-CGCCGaGCUgG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home