miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 49769 0.66 0.725717
Target:  5'- aCGgcuUGGCAUGCAGcacgcuCGGCUCGAUCg -3'
miRNA:   3'- -GCau-GCUGUGCGUUcc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 34099 0.66 0.7361
Target:  5'- gCGUACGACGCGUugauGaCGGCguuuugaagCGACa -3'
miRNA:   3'- -GCAUGCUGUGCGuu--CcGCCGa--------GCUGg -5'
22569 3' -55.5 NC_005091.1 + 52208 0.7 0.522889
Target:  5'- uGgcCGACACggacccgguaguGCGGGGCGGCUuUGACa -3'
miRNA:   3'- gCauGCUGUG------------CGUUCCGCCGA-GCUGg -5'
22569 3' -55.5 NC_005091.1 + 57768 0.67 0.715244
Target:  5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3'
miRNA:   3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5'
22569 3' -55.5 NC_005091.1 + 44591 0.7 0.48207
Target:  5'- uCGUACGugGCGUcgAAGuguucCGGCUUGAUCg -3'
miRNA:   3'- -GCAUGCugUGCG--UUCc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 34513 0.72 0.414657
Target:  5'- aCGUAgcCGAcCACGcCAAGGCGGaUCaGACCg -3'
miRNA:   3'- -GCAU--GCU-GUGC-GUUCCGCCgAG-CUGG- -5'
22569 3' -55.5 NC_005091.1 + 9240 0.66 0.756553
Target:  5'- gGUGCGGCccuGCGaAGGGCGaC-CGGCCg -3'
miRNA:   3'- gCAUGCUG---UGCgUUCCGCcGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 46437 0.73 0.342696
Target:  5'- ---uCGGCAUGCAAGGCGaucaagaaggcgacGCUCGACa -3'
miRNA:   3'- gcauGCUGUGCGUUCCGC--------------CGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 807 0.66 0.756553
Target:  5'- uCGUGCGcuGCGCugccgcguggguGUAcGGCGGCgauccugCGGCCa -3'
miRNA:   3'- -GCAUGC--UGUG------------CGUuCCGCCGa------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 8231 0.69 0.56497
Target:  5'- aCGUGCuGAU-CGCGguacuGGGCGGCgUCGGCa -3'
miRNA:   3'- -GCAUG-CUGuGCGU-----UCCGCCG-AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 48942 0.69 0.57564
Target:  5'- gCGUGCGACgguuugAgGCGGGGCaggauuggGGCUUGGCg -3'
miRNA:   3'- -GCAUGCUG------UgCGUUCCG--------CCGAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 374 0.67 0.715244
Target:  5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3'
miRNA:   3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5'
22569 3' -55.5 NC_005091.1 + 38403 0.67 0.704691
Target:  5'- aGUACGcUACGagcaGCGGCUCG-CCg -3'
miRNA:   3'- gCAUGCuGUGCguucCGCCGAGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 18362 0.67 0.698327
Target:  5'- gGUACGugACGaucugcucguuGCGGCUCGugUc -3'
miRNA:   3'- gCAUGCugUGCguuc-------CGCCGAGCugG- -5'
22569 3' -55.5 NC_005091.1 + 11559 0.68 0.640308
Target:  5'- uGUAgGuuGCACGCAGGGCaucgagcuGGCgcuUCGGCUg -3'
miRNA:   3'- gCAUgC--UGUGCGUUCCG--------CCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 55582 0.66 0.724673
Target:  5'- --cGCGGucCACGCGcucgugcAGGCGGCgaUCGGCg -3'
miRNA:   3'- gcaUGCU--GUGCGU-------UCCGCCG--AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 30086 0.66 0.725717
Target:  5'- --gACGGaccaGCGCuuuaAGGGCGGCgaagucgcCGACCa -3'
miRNA:   3'- gcaUGCUg---UGCG----UUCCGCCGa-------GCUGG- -5'
22569 3' -55.5 NC_005091.1 + 9869 0.69 0.597104
Target:  5'- cCGUACGugACGaucauccuCGAcGGCGGCUacACCg -3'
miRNA:   3'- -GCAUGCugUGC--------GUU-CCGCCGAgcUGG- -5'
22569 3' -55.5 NC_005091.1 + 50941 0.69 0.596028
Target:  5'- gCGUcaGCGAC-CGCAAGcGCGGUgcgcacgggcaaaUCGGCa -3'
miRNA:   3'- -GCA--UGCUGuGCGUUC-CGCCG-------------AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 52451 0.69 0.586353
Target:  5'- --cAgGGCGCGCcGGGCGGC--GACCc -3'
miRNA:   3'- gcaUgCUGUGCGuUCCGCCGagCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.