Results 61 - 69 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22569 | 3' | -55.5 | NC_005091.1 | + | 55582 | 0.66 | 0.724673 |
Target: 5'- --cGCGGucCACGCGcucgugcAGGCGGCgaUCGGCg -3' miRNA: 3'- gcaUGCU--GUGCGU-------UCCGCCG--AGCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 57768 | 0.67 | 0.715244 |
Target: 5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3' miRNA: 3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 374 | 0.67 | 0.715244 |
Target: 5'- cCGU-CGACGcCGUcgugAAGGCGGCcaagCGGCg -3' miRNA: 3'- -GCAuGCUGU-GCG----UUCCGCCGa---GCUGg -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 38403 | 0.67 | 0.704691 |
Target: 5'- aGUACGcUACGagcaGCGGCUCG-CCg -3' miRNA: 3'- gCAUGCuGUGCguucCGCCGAGCuGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 18362 | 0.67 | 0.698327 |
Target: 5'- gGUACGugACGaucugcucguuGCGGCUCGugUc -3' miRNA: 3'- gCAUGCugUGCguuc-------CGCCGAGCugG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 11559 | 0.68 | 0.640308 |
Target: 5'- uGUAgGuuGCACGCAGGGCaucgagcuGGCgcuUCGGCUg -3' miRNA: 3'- gCAUgC--UGUGCGUUCCG--------CCG---AGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 12368 | 0.68 | 0.618684 |
Target: 5'- --cGCGACgaGCGCGGccagugcgacGGCGGCgacuaCGGCCg -3' miRNA: 3'- gcaUGCUG--UGCGUU----------CCGCCGa----GCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 7999 | 0.68 | 0.607884 |
Target: 5'- cCGUACGAacguguGCGCGAGGggauCGaGgUCGGCCu -3' miRNA: 3'- -GCAUGCUg-----UGCGUUCC----GC-CgAGCUGG- -5' |
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22569 | 3' | -55.5 | NC_005091.1 | + | 28268 | 0.79 | 0.160761 |
Target: 5'- --gGCGACGCGCu-GGCGGCUugcgUGACCu -3' miRNA: 3'- gcaUGCUGUGCGuuCCGCCGA----GCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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