miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22569 3' -55.5 NC_005091.1 + 32301 0.69 0.56497
Target:  5'- cCGUugACGACGCG-AAGGUGauGCUCGcuGCCg -3'
miRNA:   3'- -GCA--UGCUGUGCgUUCCGC--CGAGC--UGG- -5'
22569 3' -55.5 NC_005091.1 + 51003 0.69 0.56497
Target:  5'- --gGCGGCG-GUAAGGCuGGCauuaaUCGACCa -3'
miRNA:   3'- gcaUGCUGUgCGUUCCG-CCG-----AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 8231 0.69 0.56497
Target:  5'- aCGUGCuGAU-CGCGguacuGGGCGGCgUCGGCa -3'
miRNA:   3'- -GCAUG-CUGuGCGU-----UCCGCCG-AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 38647 0.69 0.56497
Target:  5'- --gAUGGCGCGCuucaacAGGaGCGGCuuaUCGACCu -3'
miRNA:   3'- gcaUGCUGUGCG------UUC-CGCCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 20381 0.69 0.559655
Target:  5'- aCGUACGuugcgacgaacauCGCGCAcGGCGGCUacucgcaaagcggCGACg -3'
miRNA:   3'- -GCAUGCu------------GUGCGUuCCGCCGA-------------GCUGg -5'
22569 3' -55.5 NC_005091.1 + 43116 0.69 0.554354
Target:  5'- --cGCGACGaGCGGGGCGauaauuuuCUCGGCCg -3'
miRNA:   3'- gcaUGCUGUgCGUUCCGCc-------GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 24882 0.69 0.543797
Target:  5'- --gGCGGCcuGCGCAGcacGGCGGaauucCUCGGCCu -3'
miRNA:   3'- gcaUGCUG--UGCGUU---CCGCC-----GAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 18300 0.69 0.543797
Target:  5'- --cGCGAUGCGCGuGGCGauGCgCGACCu -3'
miRNA:   3'- gcaUGCUGUGCGUuCCGC--CGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 52208 0.7 0.522889
Target:  5'- uGgcCGACACggacccgguaguGCGGGGCGGCUuUGACa -3'
miRNA:   3'- gCauGCUGUG------------CGUUCCGCCGA-GCUGg -5'
22569 3' -55.5 NC_005091.1 + 55397 0.7 0.521852
Target:  5'- --cGCGAgCACGC-GGGCGGCaaagcugUCGAUCu -3'
miRNA:   3'- gcaUGCU-GUGCGuUCCGCCG-------AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 12567 0.7 0.512552
Target:  5'- -uUGCGACGCauCGAGGacaaGCUCGACCg -3'
miRNA:   3'- gcAUGCUGUGc-GUUCCgc--CGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 4305 0.7 0.512552
Target:  5'- aCGUACGGCACGguGacgGGCGcGC-CG-CCg -3'
miRNA:   3'- -GCAUGCUGUGCguU---CCGC-CGaGCuGG- -5'
22569 3' -55.5 NC_005091.1 + 24726 0.7 0.502299
Target:  5'- uGgcCGACAa-CAAGGCGGCguUCGACg -3'
miRNA:   3'- gCauGCUGUgcGUUCCGCCG--AGCUGg -5'
22569 3' -55.5 NC_005091.1 + 44591 0.7 0.48207
Target:  5'- uCGUACGugGCGUcgAAGuguucCGGCUUGAUCg -3'
miRNA:   3'- -GCAUGCugUGCG--UUCc----GCCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 29511 0.71 0.472105
Target:  5'- ---uCGACGCGCAAgGGCGGCgucUCGGUCg -3'
miRNA:   3'- gcauGCUGUGCGUU-CCGCCG---AGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 34432 0.71 0.472105
Target:  5'- gCGUGCagUACGaCAAGcGCGGC-CGGCCg -3'
miRNA:   3'- -GCAUGcuGUGC-GUUC-CGCCGaGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 24019 0.71 0.442856
Target:  5'- -cUGCGGCgGCGaAGGGCGGuCUCGACg -3'
miRNA:   3'- gcAUGCUG-UGCgUUCCGCC-GAGCUGg -5'
22569 3' -55.5 NC_005091.1 + 44655 0.71 0.433335
Target:  5'- aCGUACGACGCgGCcgagAAGGCG-CUCGAa- -3'
miRNA:   3'- -GCAUGCUGUG-CG----UUCCGCcGAGCUgg -5'
22569 3' -55.5 NC_005091.1 + 54409 0.72 0.423934
Target:  5'- aCGgACGACauGCGCGAaGC-GCUCGACCa -3'
miRNA:   3'- -GCaUGCUG--UGCGUUcCGcCGAGCUGG- -5'
22569 3' -55.5 NC_005091.1 + 44877 0.72 0.423934
Target:  5'- aCGgGCGGCG-GCAAGGCGGC-CGAa- -3'
miRNA:   3'- -GCaUGCUGUgCGUUCCGCCGaGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.