Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22570 | 3' | -55.6 | NC_005091.1 | + | 16538 | 1.14 | 0.000571 |
Target: 5'- gCCGAGGUCCAAAUCCCGGCGUCGAGCa -3' miRNA: 3'- -GGCUCCAGGUUUAGGGCCGCAGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 13610 | 0.79 | 0.164925 |
Target: 5'- aUCGAGGaaagCGA--CCCGGCGUCGAGCa -3' miRNA: 3'- -GGCUCCag--GUUuaGGGCCGCAGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 26653 | 0.74 | 0.312095 |
Target: 5'- aUCGA-GUCgGcggCCCGGCGUUGAGCg -3' miRNA: 3'- -GGCUcCAGgUuuaGGGCCGCAGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 56130 | 0.74 | 0.315113 |
Target: 5'- aCCGgcaucuugcucaggaAGGUCCGGAUUCCaGCG-CGGGCg -3' miRNA: 3'- -GGC---------------UCCAGGUUUAGGGcCGCaGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 18151 | 0.73 | 0.368075 |
Target: 5'- gCGAGcUUCGcggCCCGGCGaUCGAGCg -3' miRNA: 3'- gGCUCcAGGUuuaGGGCCGC-AGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 32493 | 0.72 | 0.410258 |
Target: 5'- cCCGAGGUUCAGcgcaucgucugCCCGGUacGUCuGAGCc -3' miRNA: 3'- -GGCUCCAGGUUua---------GGGCCG--CAG-CUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 11370 | 0.71 | 0.44954 |
Target: 5'- uCCGcuGUuuGAGUCCgGGCGUCGGccGCg -3' miRNA: 3'- -GGCucCAggUUUAGGgCCGCAGCU--CG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 31761 | 0.71 | 0.44954 |
Target: 5'- uCCGAGGcggCCGGGuUCCaCGGCa-CGAGCa -3' miRNA: 3'- -GGCUCCa--GGUUU-AGG-GCCGcaGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 5717 | 0.71 | 0.481811 |
Target: 5'- gCUGGGGUCCGuauugucGAcauugcgccggaucaUCCCGGCGaucuccuuagCGAGCg -3' miRNA: 3'- -GGCUCCAGGU-------UU---------------AGGGCCGCa---------GCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 26425 | 0.7 | 0.509026 |
Target: 5'- gCCGGGGcugCCAucguagcggCCgGGCG-CGAGCa -3' miRNA: 3'- -GGCUCCa--GGUuua------GGgCCGCaGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 25200 | 0.69 | 0.550462 |
Target: 5'- aCCGGGGUCgAugcagCCgGcGCGUCGAugGCg -3' miRNA: 3'- -GGCUCCAGgUuua--GGgC-CGCAGCU--CG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 701 | 0.68 | 0.635787 |
Target: 5'- uCCGcaguGGUCgAuGUCCgGGCugcugcgugagGUCGAGCg -3' miRNA: 3'- -GGCu---CCAGgUuUAGGgCCG-----------CAGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 51789 | 0.68 | 0.646529 |
Target: 5'- uCCGcGaUCU---UCCCGGCGUcCGGGCg -3' miRNA: 3'- -GGCuCcAGGuuuAGGGCCGCA-GCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 20224 | 0.68 | 0.646529 |
Target: 5'- aCGAuGUCCAguGAagCCGcGCaGUCGAGCg -3' miRNA: 3'- gGCUcCAGGU--UUagGGC-CG-CAGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 48603 | 0.68 | 0.657259 |
Target: 5'- gUCGGGGUCCca--UCCGGCGagGcGCg -3' miRNA: 3'- -GGCUCCAGGuuuaGGGCCGCagCuCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 14626 | 0.67 | 0.682902 |
Target: 5'- gUCGGcGUCCAGuugcaagcagccgucGcCCCGGCaUCGAGCg -3' miRNA: 3'- -GGCUcCAGGUU---------------UaGGGCCGcAGCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 6615 | 0.67 | 0.688215 |
Target: 5'- gCGGcGUCCGGGcUgCCGGCGUucaugccCGAGCg -3' miRNA: 3'- gGCUcCAGGUUU-AgGGCCGCA-------GCUCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 4187 | 0.67 | 0.697746 |
Target: 5'- gCCGAGcggauGUCCAAGguccugucguugCCCGGCGgCGcGCc -3' miRNA: 3'- -GGCUC-----CAGGUUUa-----------GGGCCGCaGCuCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 57254 | 0.67 | 0.699858 |
Target: 5'- gCCGAucaUCCcgcaaCCCGGCGUCG-GCa -3' miRNA: 3'- -GGCUcc-AGGuuua-GGGCCGCAGCuCG- -5' |
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22570 | 3' | -55.6 | NC_005091.1 | + | 1506 | 0.67 | 0.710376 |
Target: 5'- uUCGGGGuaUCCgAAAUCCuUGGCGcUCG-GCa -3' miRNA: 3'- -GGCUCC--AGG-UUUAGG-GCCGC-AGCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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