Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22570 | 5' | -52.7 | NC_005091.1 | + | 12612 | 0.7 | 0.672366 |
Target: 5'- --cUCGGAuguCGCCAACGUaaUUCGcGACCCa -3' miRNA: 3'- gacAGCCU---GCGGUUGUA--GAGC-UUGGG- -5' |
|||||||
22570 | 5' | -52.7 | NC_005091.1 | + | 27326 | 0.72 | 0.551641 |
Target: 5'- aCUGcggCGcGACGCCAGCcUCUUGAuggccgaaggacACCCg -3' miRNA: 3'- -GACa--GC-CUGCGGUUGuAGAGCU------------UGGG- -5' |
|||||||
22570 | 5' | -52.7 | NC_005091.1 | + | 14504 | 0.75 | 0.400363 |
Target: 5'- -cGUCGGuGCGCCGguaagcguGCcgCUCGAugCCg -3' miRNA: 3'- gaCAGCC-UGCGGU--------UGuaGAGCUugGG- -5' |
|||||||
22570 | 5' | -52.7 | NC_005091.1 | + | 16503 | 1.13 | 0.001192 |
Target: 5'- gCUGUCGGACGCCAACAUCUCGAACCCa -3' miRNA: 3'- -GACAGCCUGCGGUUGUAGAGCUUGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home