miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22571 5' -58.6 NC_005091.1 + 16773 0.66 0.571357
Target:  5'- cGCGUGGGCCuucuaCACuccgaagcucGGGugGACc -3'
miRNA:   3'- uCGCACCCGGuua--GUGc---------CCCugCUGc -5'
22571 5' -58.6 NC_005091.1 + 16440 0.66 0.560855
Target:  5'- cGGaaaGUGGaucaacaagaCGAUCAgCGGGGGCGGCGg -3'
miRNA:   3'- -UCg--CACCcg--------GUUAGU-GCCCCUGCUGC- -5'
22571 5' -58.6 NC_005091.1 + 5322 0.66 0.540019
Target:  5'- cGGcCGUGcGGCCAGUgAUGugauccGGGGCGGCc -3'
miRNA:   3'- -UC-GCAC-CCGGUUAgUGC------CCCUGCUGc -5'
22571 5' -58.6 NC_005091.1 + 12961 0.67 0.529699
Target:  5'- aGGuUGUGGGCCAcgGUCGucCGGGccgaGCGGCGu -3'
miRNA:   3'- -UC-GCACCCGGU--UAGU--GCCCc---UGCUGC- -5'
22571 5' -58.6 NC_005091.1 + 8225 0.67 0.519451
Target:  5'- aAGCGgacGuGCUGAUCGCGGuacuGGGCGGCGu -3'
miRNA:   3'- -UCGCac-C-CGGUUAGUGCC----CCUGCUGC- -5'
22571 5' -58.6 NC_005091.1 + 16986 0.68 0.43886
Target:  5'- gGGC-UGGGCgGAcggagcgucgggCugGGGGACGACc -3'
miRNA:   3'- -UCGcACCCGgUUa-----------GugCCCCUGCUGc -5'
22571 5' -58.6 NC_005091.1 + 16650 0.69 0.413005
Target:  5'- cGGCGUGGGgUAcgCACGGaaaGACGGgGg -3'
miRNA:   3'- -UCGCACCCgGUuaGUGCCc--CUGCUgC- -5'
22571 5' -58.6 NC_005091.1 + 34383 0.71 0.298844
Target:  5'- aAGCGUGGGCguGUCgaguugcugguACGGGuuCGACa -3'
miRNA:   3'- -UCGCACCCGguUAG-----------UGCCCcuGCUGc -5'
22571 5' -58.6 NC_005091.1 + 56444 0.72 0.271053
Target:  5'- uGGCGUaugGGGCU--UCugGcGGGACGGCa -3'
miRNA:   3'- -UCGCA---CCCGGuuAGugC-CCCUGCUGc -5'
22571 5' -58.6 NC_005091.1 + 35848 0.75 0.158016
Target:  5'- cGGCGgccGGGaagguGUCACGGGGAUGGCGu -3'
miRNA:   3'- -UCGCa--CCCggu--UAGUGCCCCUGCUGC- -5'
22571 5' -58.6 NC_005091.1 + 16819 1.08 0.000658
Target:  5'- gAGCGUGGGCCAAUCACGGGGACGACGu -3'
miRNA:   3'- -UCGCACCCGGUUAGUGCCCCUGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.