miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22572 3' -52.9 NC_005091.1 + 52811 0.66 0.832868
Target:  5'- -cGCGUuGCCguuCAACAUCCGCGcCUu -3'
miRNA:   3'- gcCGCAcUGGau-GUUGUAGGCGUaGA- -5'
22572 3' -52.9 NC_005091.1 + 28143 0.67 0.80475
Target:  5'- cCGGCGUGGCgUcCGuCGUCuuCGCGUCg -3'
miRNA:   3'- -GCCGCACUGgAuGUuGUAG--GCGUAGa -5'
22572 3' -52.9 NC_005091.1 + 16082 0.67 0.794992
Target:  5'- uCGGCcUGACCgaugUAGCcgUCGCAUCg -3'
miRNA:   3'- -GCCGcACUGGau--GUUGuaGGCGUAGa -5'
22572 3' -52.9 NC_005091.1 + 22143 0.67 0.771905
Target:  5'- aGGCGUGACgCgcccgcgcagugcgUACAGCaAUCCGCGc-- -3'
miRNA:   3'- gCCGCACUG-G--------------AUGUUG-UAGGCGUaga -5'
22572 3' -52.9 NC_005091.1 + 1384 0.68 0.733184
Target:  5'- cCGGCGUGAUCgACuGCuugCCGCAcgUCg -3'
miRNA:   3'- -GCCGCACUGGaUGuUGua-GGCGU--AGa -5'
22572 3' -52.9 NC_005091.1 + 18197 0.68 0.722449
Target:  5'- aCGGCGUG-CCguuCGACuucagGUCgCGCAUCg -3'
miRNA:   3'- -GCCGCACuGGau-GUUG-----UAG-GCGUAGa -5'
22572 3' -52.9 NC_005091.1 + 25714 0.68 0.711622
Target:  5'- aGGaaCGUGcCCUGCAuguCAUCCGCGcUCa -3'
miRNA:   3'- gCC--GCACuGGAUGUu--GUAGGCGU-AGa -5'
22572 3' -52.9 NC_005091.1 + 16908 0.68 0.710534
Target:  5'- uGGCGUGAUCgACAAUAcgcugacggucccUCCGuCGUCa -3'
miRNA:   3'- gCCGCACUGGaUGUUGU-------------AGGC-GUAGa -5'
22572 3' -52.9 NC_005091.1 + 36320 0.69 0.678706
Target:  5'- gCGGCGUgccGACCcGCuuguCAUCCGcCGUCa -3'
miRNA:   3'- -GCCGCA---CUGGaUGuu--GUAGGC-GUAGa -5'
22572 3' -52.9 NC_005091.1 + 48822 0.72 0.534961
Target:  5'- uGGCGUG-CCcGCAACGcauggCCGUAUCUc -3'
miRNA:   3'- gCCGCACuGGaUGUUGUa----GGCGUAGA- -5'
22572 3' -52.9 NC_005091.1 + 4276 0.72 0.492477
Target:  5'- gGGCaacgacagGACCUugGACAUCCGC-UCg -3'
miRNA:   3'- gCCGca------CUGGAugUUGUAGGCGuAGa -5'
22572 3' -52.9 NC_005091.1 + 17279 1.09 0.001893
Target:  5'- cCGGCGUGACCUACAACAUCCGCAUCUa -3'
miRNA:   3'- -GCCGCACUGGAUGUUGUAGGCGUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.