miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22573 3' -48 NC_005091.1 + 19514 0.66 0.989887
Target:  5'- gUGCAGCGAUuggacgGUCGUA--GGUCU-CGg -3'
miRNA:   3'- aGCGUUGCUA------UAGCAUacCCAGAuGC- -5'
22573 3' -48 NC_005091.1 + 6655 0.66 0.988359
Target:  5'- uUCGCGAUGucuUCGaUGUGGGcCUuCGa -3'
miRNA:   3'- -AGCGUUGCuauAGC-AUACCCaGAuGC- -5'
22573 3' -48 NC_005091.1 + 12720 0.67 0.977895
Target:  5'- gCGUGugGAUcgacaAUCGgcUGGGUC-GCGa -3'
miRNA:   3'- aGCGUugCUA-----UAGCauACCCAGaUGC- -5'
22573 3' -48 NC_005091.1 + 20129 0.67 0.976281
Target:  5'- -gGCAGCaGAUGUCG-AUGacguucaagcgcggcGGUCUGCGc -3'
miRNA:   3'- agCGUUG-CUAUAGCaUAC---------------CCAGAUGC- -5'
22573 3' -48 NC_005091.1 + 36459 0.67 0.972182
Target:  5'- gCGCAACGAUcUCGaccUGUGGGgcgUCUGg- -3'
miRNA:   3'- aGCGUUGCUAuAGC---AUACCC---AGAUgc -5'
22573 3' -48 NC_005091.1 + 8990 0.68 0.961727
Target:  5'- cCGCAGCu---UCGUAcGGGUCUuCGg -3'
miRNA:   3'- aGCGUUGcuauAGCAUaCCCAGAuGC- -5'
22573 3' -48 NC_005091.1 + 2394 0.68 0.953404
Target:  5'- cUCGCAACGGg--CGUA---GUCUACGa -3'
miRNA:   3'- -AGCGUUGCUauaGCAUaccCAGAUGC- -5'
22573 3' -48 NC_005091.1 + 7884 0.73 0.797259
Target:  5'- cUCGCGACGGU-UCGauggGUGGGUCcAUGu -3'
miRNA:   3'- -AGCGUUGCUAuAGCa---UACCCAGaUGC- -5'
22573 3' -48 NC_005091.1 + 47387 0.75 0.655325
Target:  5'- aUGCGGCGGUguuuAUCGUGUuguacGGGUCUACc -3'
miRNA:   3'- aGCGUUGCUA----UAGCAUA-----CCCAGAUGc -5'
22573 3' -48 NC_005091.1 + 2811 0.76 0.598186
Target:  5'- uUCGCGAgaGAUAUCGUccGGGUCaucgGCGa -3'
miRNA:   3'- -AGCGUUg-CUAUAGCAuaCCCAGa---UGC- -5'
22573 3' -48 NC_005091.1 + 17603 1.11 0.004896
Target:  5'- uUCGCAACGAUAUCGUAUGGGUCUACGa -3'
miRNA:   3'- -AGCGUUGCUAUAGCAUACCCAGAUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.