miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22574 3' -53.6 NC_005091.1 + 19935 0.66 0.854726
Target:  5'- gGCGGCuucaugaaGUUcGAGCGcGAGCCGGg -3'
miRNA:   3'- gUGCUGcaug----CAAcUUCGC-CUCGGCC- -5'
22574 3' -53.6 NC_005091.1 + 25073 0.66 0.851377
Target:  5'- gCGCGGCGUucaaccgaucgGCGgccacgGAGGCGGucgccaucgacgcGCCGGc -3'
miRNA:   3'- -GUGCUGCA-----------UGCaa----CUUCGCCu------------CGGCC- -5'
22574 3' -53.6 NC_005091.1 + 52094 0.66 0.846286
Target:  5'- gCGCGGcCGUAUGccgUGAaaaGGCGGccgucGCCGGc -3'
miRNA:   3'- -GUGCU-GCAUGCa--ACU---UCGCCu----CGGCC- -5'
22574 3' -53.6 NC_005091.1 + 17308 0.66 0.846286
Target:  5'- cCACGAag-ACGU--GAGCGucGGGCCGGa -3'
miRNA:   3'- -GUGCUgcaUGCAacUUCGC--CUCGGCC- -5'
22574 3' -53.6 NC_005091.1 + 7313 0.66 0.837625
Target:  5'- gCACGgagaGCGUgGCGUUGAAGacCGGAacGUCGGc -3'
miRNA:   3'- -GUGC----UGCA-UGCAACUUC--GCCU--CGGCC- -5'
22574 3' -53.6 NC_005091.1 + 4308 0.66 0.837625
Target:  5'- -cUGACGUACGgcacggUGAcgGGCGcgccGCCGGg -3'
miRNA:   3'- guGCUGCAUGCa-----ACU--UCGCcu--CGGCC- -5'
22574 3' -53.6 NC_005091.1 + 16655 0.66 0.823328
Target:  5'- aGCGACG-GCG-UGggGUacgcacggaaagacgGGGGCUGGa -3'
miRNA:   3'- gUGCUGCaUGCaACuuCG---------------CCUCGGCC- -5'
22574 3' -53.6 NC_005091.1 + 26101 0.66 0.819673
Target:  5'- cCACGGCGUACGUcGGcguGCaGGGCgCGa -3'
miRNA:   3'- -GUGCUGCAUGCAaCUu--CGcCUCG-GCc -5'
22574 3' -53.6 NC_005091.1 + 1295 0.68 0.761482
Target:  5'- uCGCGACGUGCGgc-AAGCaGucgaucacGCCGGg -3'
miRNA:   3'- -GUGCUGCAUGCaacUUCGcCu-------CGGCC- -5'
22574 3' -53.6 NC_005091.1 + 14088 0.69 0.687825
Target:  5'- -uCGACGUugcCGUccacGAAGCGGuuccGGCCGGu -3'
miRNA:   3'- guGCUGCAu--GCAa---CUUCGCC----UCGGCC- -5'
22574 3' -53.6 NC_005091.1 + 34437 0.71 0.589777
Target:  5'- aCGCGGCGUGCaGUacGAcaAGCGcGGCCGGc -3'
miRNA:   3'- -GUGCUGCAUG-CAa-CU--UCGCcUCGGCC- -5'
22574 3' -53.6 NC_005091.1 + 55603 0.72 0.525538
Target:  5'- gGCGGCGaucgGCGaagUGAuGCGGcaAGCCGGg -3'
miRNA:   3'- gUGCUGCa---UGCa--ACUuCGCC--UCGGCC- -5'
22574 3' -53.6 NC_005091.1 + 48932 0.72 0.504686
Target:  5'- cUACGcuuguGCGUGCGacgguUUGAGGCGGGGCaGGa -3'
miRNA:   3'- -GUGC-----UGCAUGC-----AACUUCGCCUCGgCC- -5'
22574 3' -53.6 NC_005091.1 + 18068 1.11 0.001331
Target:  5'- cCACGACGUACGUUGAAGCGGAGCCGGg -3'
miRNA:   3'- -GUGCUGCAUGCAACUUCGCCUCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.