miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22574 5' -60.1 NC_005091.1 + 19567 0.66 0.485385
Target:  5'- uUCCCGCaGGccacggagggcacGCCGCAgGCC-GUCGUg -3'
miRNA:   3'- cAGGGCGgCU-------------UGGCGUgUGGgCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 12269 0.66 0.476625
Target:  5'- gGUCCUgauGCCGGACgacaugaaggCGCugAuCCCGcCGCa -3'
miRNA:   3'- -CAGGG---CGGCUUG----------GCGugU-GGGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 6565 0.66 0.476625
Target:  5'- -aCCaUGCgGAugCGUucgcCAUCCGUCGCg -3'
miRNA:   3'- caGG-GCGgCUugGCGu---GUGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 1244 0.66 0.476625
Target:  5'- aUUUCGCCGGgaugGCUGCACGCCaGUUaGCg -3'
miRNA:   3'- cAGGGCGGCU----UGGCGUGUGGgCAG-CG- -5'
22574 5' -60.1 NC_005091.1 + 28273 0.66 0.476625
Target:  5'- cGUCUCGCCGAcgaauAUCGCGgGCgUCGgCGCu -3'
miRNA:   3'- -CAGGGCGGCU-----UGGCGUgUG-GGCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 12195 0.67 0.470829
Target:  5'- -gCUCGCCGuGCCguuccgcaucaucaaGCAgGCCCGgcUCGCg -3'
miRNA:   3'- caGGGCGGCuUGG---------------CGUgUGGGC--AGCG- -5'
22574 5' -60.1 NC_005091.1 + 961 0.67 0.466985
Target:  5'- cGUCgUGCCGGAacCCGCGCugaucUCCGUccCGCa -3'
miRNA:   3'- -CAGgGCGGCUU--GGCGUGu----GGGCA--GCG- -5'
22574 5' -60.1 NC_005091.1 + 50005 0.67 0.466985
Target:  5'- aUCCgcaauaCGCgGAACCGCGCuaCCGUCGg -3'
miRNA:   3'- cAGG------GCGgCUUGGCGUGugGGCAGCg -5'
22574 5' -60.1 NC_005091.1 + 23055 0.67 0.466985
Target:  5'- ---aCGCCGuAACCGCACGCCaa--GCa -3'
miRNA:   3'- caggGCGGC-UUGGCGUGUGGgcagCG- -5'
22574 5' -60.1 NC_005091.1 + 31727 0.67 0.466985
Target:  5'- -cUgCGCCGAaauGCCGUACGCCUucUGCg -3'
miRNA:   3'- caGgGCGGCU---UGGCGUGUGGGcaGCG- -5'
22574 5' -60.1 NC_005091.1 + 6634 0.67 0.466985
Target:  5'- cGUUCaUGCCcGAgCGCGCGCUCGUCuGCu -3'
miRNA:   3'- -CAGG-GCGGcUUgGCGUGUGGGCAG-CG- -5'
22574 5' -60.1 NC_005091.1 + 6080 0.67 0.457448
Target:  5'- cGUCCgacUGUCGcGCCGCuucgGCUCGUCGCc -3'
miRNA:   3'- -CAGG---GCGGCuUGGCGug--UGGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 37305 0.67 0.448015
Target:  5'- -cCUCGCCGAcaucuuccgGCCGCcggaACGCCUGaccguaUCGCa -3'
miRNA:   3'- caGGGCGGCU---------UGGCG----UGUGGGC------AGCG- -5'
22574 5' -60.1 NC_005091.1 + 13905 0.67 0.448015
Target:  5'- cGUCUgGuuGAACCGCAgcuugUACCgG-CGCg -3'
miRNA:   3'- -CAGGgCggCUUGGCGU-----GUGGgCaGCG- -5'
22574 5' -60.1 NC_005091.1 + 4111 0.67 0.448015
Target:  5'- cGUCaaGCuCGAcaACUGCugGCCCGgcaCGCc -3'
miRNA:   3'- -CAGggCG-GCU--UGGCGugUGGGCa--GCG- -5'
22574 5' -60.1 NC_005091.1 + 23401 0.67 0.445206
Target:  5'- --gCCGCCGAacagACCGagcagcgccaucgcCGCGCgCGUCGCc -3'
miRNA:   3'- cagGGCGGCU----UGGC--------------GUGUGgGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 897 0.67 0.442407
Target:  5'- aUCCCgGCgCGAucaucauugcgaccuGCuCGCACGCCauguuCGUCGCg -3'
miRNA:   3'- cAGGG-CG-GCU---------------UG-GCGUGUGG-----GCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 42583 0.67 0.438691
Target:  5'- uGUCCgCGCCG---CGCACGCUCGgaCGCu -3'
miRNA:   3'- -CAGG-GCGGCuugGCGUGUGGGCa-GCG- -5'
22574 5' -60.1 NC_005091.1 + 25334 0.67 0.438691
Target:  5'- uUCUCG-CGAACUGC-UugCCGUCGUc -3'
miRNA:   3'- cAGGGCgGCUUGGCGuGugGGCAGCG- -5'
22574 5' -60.1 NC_005091.1 + 44510 0.67 0.437765
Target:  5'- ---aCGUCGAgacgauauuacagGCCGuCGCugCCGUCGCc -3'
miRNA:   3'- caggGCGGCU-------------UGGC-GUGugGGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.