Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22575 | 5' | -52.6 | NC_005091.1 | + | 11553 | 0.66 | 0.839496 |
Target: 5'- cGAUCCuc--GGCGcauucggcuacAGCCGGAUCGUCAa -3' miRNA: 3'- -CUAGGucuaCCGC-----------UUGGUCUGGUAGU- -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 23902 | 0.66 | 0.857009 |
Target: 5'- cGAUUacgCAGGaagaGGCGAACCAGAaaAUCAa -3' miRNA: 3'- -CUAG---GUCUa---CCGCUUGGUCUggUAGU- -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 18768 | 0.67 | 0.81154 |
Target: 5'- -cUCCGGAUaGaaGACCGGGCCGUCc -3' miRNA: 3'- cuAGGUCUAcCgcUUGGUCUGGUAGu -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 37804 | 0.67 | 0.81154 |
Target: 5'- uGAUCCGGuUGGCGAcauCgAGGCacaCAUCAa -3' miRNA: 3'- -CUAGGUCuACCGCUu--GgUCUG---GUAGU- -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 13029 | 0.67 | 0.781811 |
Target: 5'- cGAUCCAGAccgagcuaucuuUGG-GGACCAG-CCAUa- -3' miRNA: 3'- -CUAGGUCU------------ACCgCUUGGUCuGGUAgu -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 20147 | 0.67 | 0.77156 |
Target: 5'- uGUCCGGGucguuguagUGGUGuucCCGGAUCGUCAg -3' miRNA: 3'- cUAGGUCU---------ACCGCuu-GGUCUGGUAGU- -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 13909 | 0.68 | 0.718292 |
Target: 5'- cGUUCAGcgGGCGcAGCguGACgGUCAg -3' miRNA: 3'- cUAGGUCuaCCGC-UUGguCUGgUAGU- -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 9138 | 0.69 | 0.696273 |
Target: 5'- cGUCCAGAUGGCGAuguCgCAcGCCGaaaUCAa -3' miRNA: 3'- cUAGGUCUACCGCUu--G-GUcUGGU---AGU- -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 9835 | 0.69 | 0.651549 |
Target: 5'- gGAUUCGGAUcGCGAuuuCCAcGACCAUCc -3' miRNA: 3'- -CUAGGUCUAcCGCUu--GGU-CUGGUAGu -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 9465 | 0.7 | 0.640292 |
Target: 5'- cGUCCAGuacGGCG-AUCAGACCGUa- -3' miRNA: 3'- cUAGGUCua-CCGCuUGGUCUGGUAgu -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 7274 | 0.7 | 0.640292 |
Target: 5'- -uUCCAcGAgcaguuUGGCGAAUCGGACgAUCGu -3' miRNA: 3'- cuAGGU-CU------ACCGCUUGGUCUGgUAGU- -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 16019 | 0.7 | 0.606519 |
Target: 5'- cGAgcgCCAaGUGGaCGAACCAGACgGUUAc -3' miRNA: 3'- -CUa--GGUcUACC-GCUUGGUCUGgUAGU- -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 45368 | 0.71 | 0.550813 |
Target: 5'- --aCgAGAUGGCcGACCAGACCAc-- -3' miRNA: 3'- cuaGgUCUACCGcUUGGUCUGGUagu -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 23534 | 0.72 | 0.486238 |
Target: 5'- uGcgCCAGAUGGCGAGCgucaucaugCAGAUCAUg- -3' miRNA: 3'- -CuaGGUCUACCGCUUG---------GUCUGGUAgu -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 1192 | 0.74 | 0.396841 |
Target: 5'- -uUCCuGAaGGCGAACCcGGCCAUCc -3' miRNA: 3'- cuAGGuCUaCCGCUUGGuCUGGUAGu -5' |
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22575 | 5' | -52.6 | NC_005091.1 | + | 18817 | 1.09 | 0.001698 |
Target: 5'- cGAUCCAGAUGGCGAACCAGACCAUCAa -3' miRNA: 3'- -CUAGGUCUACCGCUUGGUCUGGUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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