miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22576 3' -51.8 NC_005091.1 + 18307 0.66 0.883456
Target:  5'- -aUGUUUC-CGACGUuCUGCGCG-CGg -3'
miRNA:   3'- aaGCAAAGcGCUGUAcGACGCGUuGC- -5'
22576 3' -51.8 NC_005091.1 + 9085 0.66 0.883456
Target:  5'- -cCGUgggUCgGCGuCGUGCUgaaGCGCAACc -3'
miRNA:   3'- aaGCAa--AG-CGCuGUACGA---CGCGUUGc -5'
22576 3' -51.8 NC_005091.1 + 51578 0.66 0.883456
Target:  5'- gUCGUgcgUCGCGugAcggGCgcgcagaaGCGCGGCa -3'
miRNA:   3'- aAGCAa--AGCGCugUa--CGa-------CGCGUUGc -5'
22576 3' -51.8 NC_005091.1 + 4848 0.66 0.875586
Target:  5'- -aCGUUUUGCG-CGUGCagUGaCGUGGCGa -3'
miRNA:   3'- aaGCAAAGCGCuGUACG--AC-GCGUUGC- -5'
22576 3' -51.8 NC_005091.1 + 42797 0.67 0.832381
Target:  5'- ------gCGCGACGagaUGCUGCGCGAg- -3'
miRNA:   3'- aagcaaaGCGCUGU---ACGACGCGUUgc -5'
22576 3' -51.8 NC_005091.1 + 33428 0.67 0.832381
Target:  5'- -gCGUccUCGCGAgCGcGCUGCGCGAa- -3'
miRNA:   3'- aaGCAa-AGCGCU-GUaCGACGCGUUgc -5'
22576 3' -51.8 NC_005091.1 + 42057 0.67 0.832381
Target:  5'- -gCGUgccacgGCGACGUGCUGCuCGACc -3'
miRNA:   3'- aaGCAaag---CGCUGUACGACGcGUUGc -5'
22576 3' -51.8 NC_005091.1 + 30907 0.67 0.813464
Target:  5'- aUCGUcagUCGCGugauCGUGCUGUuCGACu -3'
miRNA:   3'- aAGCAa--AGCGCu---GUACGACGcGUUGc -5'
22576 3' -51.8 NC_005091.1 + 11390 0.67 0.803696
Target:  5'- gUCGgc-CGCGuCAcGCUGCGCuuCGg -3'
miRNA:   3'- aAGCaaaGCGCuGUaCGACGCGuuGC- -5'
22576 3' -51.8 NC_005091.1 + 1288 0.67 0.803696
Target:  5'- -gUGUucUUCGCGACGUGCgGCaaGCAGuCGa -3'
miRNA:   3'- aaGCA--AAGCGCUGUACGaCG--CGUU-GC- -5'
22576 3' -51.8 NC_005091.1 + 19534 0.68 0.793736
Target:  5'- gUCGUgUUCgGCGAU-UGCUgGUGCAGCGa -3'
miRNA:   3'- aAGCA-AAG-CGCUGuACGA-CGCGUUGC- -5'
22576 3' -51.8 NC_005091.1 + 48361 0.68 0.793736
Target:  5'- cUCG-UUCGgGAUAUcugcGUUGCGCAACu -3'
miRNA:   3'- aAGCaAAGCgCUGUA----CGACGCGUUGc -5'
22576 3' -51.8 NC_005091.1 + 55928 0.68 0.773291
Target:  5'- cUCGUgcgccagUUGCuGACcgGCUGCGCcGCu -3'
miRNA:   3'- aAGCAa------AGCG-CUGuaCGACGCGuUGc -5'
22576 3' -51.8 NC_005091.1 + 1821 0.68 0.752225
Target:  5'- gUCGaccgUCGCGACGUGCUccuuCGCuuCGg -3'
miRNA:   3'- aAGCaa--AGCGCUGUACGAc---GCGuuGC- -5'
22576 3' -51.8 NC_005091.1 + 13314 0.69 0.741491
Target:  5'- gUUCGUUgCGCGGaucGCgGCGCAAUGg -3'
miRNA:   3'- -AAGCAAaGCGCUguaCGaCGCGUUGC- -5'
22576 3' -51.8 NC_005091.1 + 51421 0.69 0.741491
Target:  5'- cUUGaaUCGCGAC-UGCacGCGCAGCGu -3'
miRNA:   3'- aAGCaaAGCGCUGuACGa-CGCGUUGC- -5'
22576 3' -51.8 NC_005091.1 + 50257 0.69 0.719682
Target:  5'- gUCGauUUUCGCGACcgGCauUGCGGCGa -3'
miRNA:   3'- aAGC--AAAGCGCUGuaCGacGCGUUGC- -5'
22576 3' -51.8 NC_005091.1 + 21756 0.69 0.719682
Target:  5'- -cCGUguaUUUGCGGCAgcgaaUGCgGCGCAugGg -3'
miRNA:   3'- aaGCA---AAGCGCUGU-----ACGaCGCGUugC- -5'
22576 3' -51.8 NC_005091.1 + 17244 0.69 0.697503
Target:  5'- cUUCGUgg-GCGACcaguuugucuUGCUGCGCGAUGc -3'
miRNA:   3'- -AAGCAaagCGCUGu---------ACGACGCGUUGC- -5'
22576 3' -51.8 NC_005091.1 + 50676 0.7 0.641086
Target:  5'- -aCGUcuauaaCGCGACGcUGUUGCGCGACu -3'
miRNA:   3'- aaGCAaa----GCGCUGU-ACGACGCGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.